Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10000 356 / 2e-122 Thioredoxin family protein (.1.2) AT5G03880 184 / 2e-55 Thioredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021357 [exp] 157 / 3e-44 AT5G03880 426 / 2e-149 Thioredoxin family protein (.1) Lus10009466 [exp] 149 / 7e-44 AT4G10000 71 / 3e-15 Thioredoxin family protein (.1.2) Lus10017034 [exp] 87 / 1e-18 AT5G03880 402 / 4e-140 Thioredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102000 [exp] 396 / 6e-138 AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2) Potri.006G213000 [exp] 177 / 1e-52 AT5G03880 455 / 8e-162 Thioredoxin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001283 pacid=23166373 polypeptide=Lus10001283 locus=Lus10001283.g ID=Lus10001283.BGIv1.0 annot-version=v1.0 ATGGCGATGAATTCTTCGCCATTGGTGAATTGGAATTGCCCTCTTCCATCAAATCATCCCTCCCTTTCGATTTCCAGCTGCCTAGCGGTAAGCGATTTCT CGTCTCGGGCGCGAATTCTTTTTCCCGCCGCCGCTGCTGCTGTCAAAGTCAAATTACCGCCGGCGGGTTACGTGAAGTTCAGGCGAAACTGGGTTCGTCG GAATGCAAAGTCTTCCGCTGACCCAGATGCTAATTCCGAACAAATTTCTAGTGGTGGAAGAACCAATTCATCATCGGCATCGTCATCACCATCAAGCAGC TTCCTTTCTGTTCTCTGCCCTCTTCTCAAGCTTTTCTCTAGTGGAGATCCTTCAAAGCAGAGAAACTTCACTTTCGAGATGTCAACTTCTTTTCTGTCCA CCTTGGCAAGACTTCCATGGGGATCAACATCTGTACAGGAGATTGATCATCCTCTTAAACCTTTGCAACTCTTTGAATTTGAGGCATGCCCATTTTGCAG GAGGGTTAGGGAGGCCATGACTGAGCTTGATCTTTCAGCTGAGGTGTATCCTTGCCCAAAAGGATCTAAAAGGCATAGGGAGATCGTTAGAGAGCTTGGT GGCAAAGAGATGTTCCCTTTTCTAGTCGATCCAAACACCGGCATTTCGATGTACGAAAGCGGTGACATTGTGAAATACTTGTTCGAGCAATACGGTAAAG GAAGAAGCCCTTCAACAGGTCTTCTGGAGAGTACATTGTTGACAGGATGGGTACCGACGATTCTTCGAGCGGGTAGAGGAATGACCCTGTGGGAAAATGC ATGTTCAGAGACGCCATCTACGAAGCTGGAACTCTTCTCCTACGAGAACAACCCGTATGCAAGAATCGTGCGAGAGGCGCTATGCGAGTTAGAGATTCCA TACATCCTTCAAAACGTGGGGACTGGATCGAAACGATCGAAGTTTCTGCTCGACGAATATGGATCCCAGGAGGTGCCGTATTTAGTTGATCCGAACACCG GGGTTCGAATCGGGGACTACAAGGAGATGCTGCAGTACTTGTTTCAGACATACTCAGAACCCAGCAACGGTTGA
AA sequence Show only first row Show all	>Lus10001283 pacid=23166373 polypeptide=Lus10001283 locus=Lus10001283.g ID=Lus10001283.BGIv1.0 annot-version=v1.0 MAMNSSPLVNWNCPLPSNHPSLSISSCLAVSDFSSRARILFPAAAAAVKVKLPPAGYVKFRRNWVRRNAKSSADPDANSEQISSGGRTNSSSASSSPSSS FLSVLCPLLKLFSSGDPSKQRNFTFEMSTSFLSTLARLPWGSTSVQEIDHPLKPLQLFEFEACPFCRRVREAMTELDLSAEVYPCPKGSKRHREIVRELG GKEMFPFLVDPNTGISMYESGDIVKYLFEQYGKGRSPSTGLLESTLLTGWVPTILRAGRGMTLWENACSETPSTKLELFSYENNPYARIVREALCELEIP YILQNVGTGSKRSKFLLDEYGSQEVPYLVDPNTGVRIGDYKEMLQYLFQTYSEPSNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	0	1
AT4G24090			unknown protein		Lus10017325 [exp]	2.0	0.8666
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	3.5	0.8557
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10038259 [exp]	5.4	0.7917
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Lus10041454 [exp]	6.8	0.8581
AT5G66090			unknown protein		Lus10041868 [exp]	7.7	0.8029
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	12.6	0.7895
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	13.0	0.7929
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	13.4	0.8443
AT2G38570			unknown protein		Lus10014180 [exp]	17.6	0.8570
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	18.4	0.7930

Compare expression of checked genes

Lus10001283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.