Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31840 633 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G19440 297 / 6e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12300 267 / 1e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 266 / 1e-78 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 265 / 9e-77 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 260 / 9e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 260 / 4e-76 RPF2 rna processing factor 2 (.1) AT1G12620 259 / 9e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 258 / 2e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 257 / 5e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009465 [exp] 1508 / 0 AT1G31840 640 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036020 [exp] 291 / 6e-86 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 277 / 2e-79 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008650 [exp] 266 / 1e-76 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10021989 [exp] 269 / 1e-75 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 265 / 1e-75 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 263 / 2e-75 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 256 / 2e-73 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012139 [exp] 256 / 1e-72 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G036400 [exp] 884 / 0 AT1G31840 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G105400 [exp] 302 / 2e-88 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 292 / 2e-87 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 283 / 5e-85 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 283 / 6e-85 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G236800 [exp] 287 / 1e-83 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 281 / 5e-82 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G045000 [exp] 271 / 3e-80 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 271 / 6e-80 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 269 / 9e-80 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001284 pacid=23166385 polypeptide=Lus10001284 locus=Lus10001284.g ID=Lus10001284.BGIv1.0 annot-version=v1.0 ATGTTATTATCGTCTGCTATAACATCCAAGGTGTACCACAACATTAGAAGCCATTTCTTCTTGCTTTCTTTCGGAAAGTTTTGCCCTTGCCTTTTGAACT ACTCAGCTTATTCAAACAGTAGCAAAAGGAGTGTAATACACCAAATCTGCGATGCCCTTCACCAACAGCAAAACCCCAAGCTCCTGGACCATACCCTTCT GTCCAAGTTAGAACCCTATCATGTGCAACCCATCCTGTTTTCCCTCCATTCCAAGCCAAATACCGCAATCCAATTCTTCGAATGGGCTGAGAAGTTCCTG AACACACCCCATTCCCCGCAATCCTTCTGTGCACTTCTCCAAATCTTGCTTCGTCGGAATTTGTTTGGTCCAGCTACTGAGGTCTTTGACAAGTTGGTTA AACAACATGGGAATGATCACGAAACGTGGTATAAGTTCTGCCAAGGGTTTCAGGATTTCAGTCATGAAGGAGGATCAAGTGTTTTCTATGGATTCTTTAT TGAGAACTTCTATCGAAAAGGGATGGTTGATACAGCTGTTCAGGTATTCGTGTATATTTGCAGAAACCGGATTTATGTATTGCCTGAAGTCATATGGGGA CTGTTGGATTCCCTGCTCGAGTTGCAAGTTGTGGATAAAATTGTAGATCATTATGATGATTTTTGTAGATTGACAAATGGGGATTCGTCTAGCTTCTATA GATTGGTTATGGAAAGGATTATCGGAAAGGGTGAAGCTAACTTAGCCTTGGGTTTGAAACTGCACAGGTTGCTACTTCAGAAGGGGTTCACTGTAGATAT TGTTACATGTAACAAAATTCTGAAATCCTTTTGCTTGCAGAATAAGGCAGGAGTCTCTGACGATTACTTTAACGAACTGATCTTGGTTGGTCCAGAGCCG AACGTGATCACATTCAGTACATTGATTAACAAATGCTGCAAACAGGGAGATCTGGATAAGGCATTTCGGCTTTATGATGCAATGGCGGTTAGGGGTCTGG CTGCTGACTTAATTGTGTATAGTATTCTTATCGACGGTCTTTTCAAGGCAGGGAGACTGGTTGAAGGAAACAAACTTCTATCCGCGGCTTTGGATAGTAA CATCAAATTGGATGTCGTCATCTTCAGCTCGGTGATGGATGCTTATGTGAAAGCTGGGGACTTAGAGAAGGCGGTTGAGGTGTATCGAACAATGCTGAAG GAAAAGATTTCGATTTCCCCGAATATGGTTAGTTACAGTATTCTTATAAAGGGATTGTGCCACAATAATAGAACCCTTGAGGCTTCCGGTGTTTTTGGGA AGATGGTGAAGCATGGGTTCAAGCCTTCTGTTTCAAGTTACTGCAGCTTGATCGACGGACTATGCAAATCGGGGAACCTAGTCGATAGCTTTCAGTTTTA CTTGGATATGAAGAAGCATGGCCATGAACCTGATGATGTTGTTTGTAATGTACTAATCAATGGCCTCTGCAAACAAGGGTTGATGAACAGTGCCTTACGG CTCTTCTTTCGAGCGCTGGAAGGAGGCTTGAAAGCCAATGTCTTAATCCTGAACACGTTGATCGACGGGTTTTGCAGGCTGAGATGCATGGCTGGTGCAG TGAAAGTGTATAGATTGATTGAAATCGTAGGTTTGAAGCCCGATGTTGTCACCTTTACCTTACTCATAAAAGCAGCAGCTCATGTTCACCAGTTGGACAT GGCATTGTTGATATATTTCCAGATGCTGAAGAAGGGTTTGGAGCCGGATGCGGTTACTTACTGCACACTCATTGATGGACTCGCCAAGCTGAACAATCCA TCGGCCGTTTTAAAGATTTTCGCTCTGATGAACCGGACCGGTATGGTACCGGATATCGCAATCTACAACGTACTTATCAACATGCATATCAGGCAGAGCC AATTGAACGAGGCATTGCGGCTCTTCGAGCAACTTCAACTAAGGGGACCGAACCCCGACACCATAACCTACAACACGTTGCTTGCCGGTTACTCCTCATA TCGAAAGCTAGACAATGCAGTCAAACTTTTCGAGCAAATGTCCGGACCGAATGCCATCACGTTCACCATACTGATTCATGCCTTCGCCAGAGAAGGTAGG CTCGAGGAAGCAATGTCCATATTCACCGAGATGTTGGAACGGGGTCCTTACCCTAATAAGGTCACCTACAGCTGTCTCATCGACGGCTACTTCAAAGCTC AAGACATGGATGGTGCGTTCGAGCTTTACAAGGAGATGCTCGAGAACAACGTTTCGCCCAACGTTGTGAGCTATAGTATGATCATAGACGGCCTCTCCAA GAGGGGTCTGGTCGAGCAAGCTTCTTGCGTGTTTCGATTCGCCTTGGAGAAGAATCTTTTGCCGGATGTGGTGACTTATACCATTCTCATTCGAGGTTAT TGCAAGGTTGGGAACGCTAAAGAAGCCATGGCAGTTTATGGACAGATGGTGATGCGTGGAATCAGACCGGACCGGTTCTTGCTGAGAACACTTGATGAGT ATCTCCTTGCCAATTCAGAGAGATCATAG
AA sequence Show only first row Show all	>Lus10001284 pacid=23166385 polypeptide=Lus10001284 locus=Lus10001284.g ID=Lus10001284.BGIv1.0 annot-version=v1.0 MLLSSAITSKVYHNIRSHFFLLSFGKFCPCLLNYSAYSNSSKRSVIHQICDALHQQQNPKLLDHTLLSKLEPYHVQPILFSLHSKPNTAIQFFEWAEKFL NTPHSPQSFCALLQILLRRNLFGPATEVFDKLVKQHGNDHETWYKFCQGFQDFSHEGGSSVFYGFFIENFYRKGMVDTAVQVFVYICRNRIYVLPEVIWG LLDSLLELQVVDKIVDHYDDFCRLTNGDSSSFYRLVMERIIGKGEANLALGLKLHRLLLQKGFTVDIVTCNKILKSFCLQNKAGVSDDYFNELILVGPEP NVITFSTLINKCCKQGDLDKAFRLYDAMAVRGLAADLIVYSILIDGLFKAGRLVEGNKLLSAALDSNIKLDVVIFSSVMDAYVKAGDLEKAVEVYRTMLK EKISISPNMVSYSILIKGLCHNNRTLEASGVFGKMVKHGFKPSVSSYCSLIDGLCKSGNLVDSFQFYLDMKKHGHEPDDVVCNVLINGLCKQGLMNSALR LFFRALEGGLKANVLILNTLIDGFCRLRCMAGAVKVYRLIEIVGLKPDVVTFTLLIKAAAHVHQLDMALLIYFQMLKKGLEPDAVTYCTLIDGLAKLNNP SAVLKIFALMNRTGMVPDIAIYNVLINMHIRQSQLNEALRLFEQLQLRGPNPDTITYNTLLAGYSSYRKLDNAVKLFEQMSGPNAITFTILIHAFAREGR LEEAMSIFTEMLERGPYPNKVTYSCLIDGYFKAQDMDGAFELYKEMLENNVSPNVVSYSMIIDGLSKRGLVEQASCVFRFALEKNLLPDVVTYTILIRGY CKVGNAKEAMAVYGQMVMRGIRPDRFLLRTLDEYLLANSERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10001284 [exp]	0	1
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	3.0	0.7461
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019081 [exp]	19.0	0.7181
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10014927 [exp]	38.9	0.7206
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014974 [exp]	60.8	0.6893
AT1G26580			unknown protein		Lus10036888 [exp]	87.8	0.6784
AT1G26580			unknown protein		Lus10037097 [exp]	90.1	0.6406
AT5G53440			unknown protein		Lus10019025 [exp]	104.6	0.6789
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	113.3	0.6641
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10040785 [exp]	117.9	0.6897
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10032422 [exp]	121.0	0.6827

Compare expression of checked genes

Lus10001284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.