Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71530 647 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 621 / 0 Protein kinase superfamily protein (.1) AT4G10010 588 / 0 Protein kinase superfamily protein (.1) AT1G09600 566 / 0 Protein kinase superfamily protein (.1) AT1G57700 550 / 0 Protein kinase superfamily protein (.1) AT1G53050 550 / 0 Protein kinase superfamily protein (.1) AT1G54610 530 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50860 523 / 1e-179 Protein kinase superfamily protein (.1) AT1G03740 505 / 3e-171 Protein kinase superfamily protein (.1.2) AT5G44290 503 / 5e-171 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009464 [exp] 1175 / 0 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028890 [exp] 575 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 559 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10008925 [exp] 558 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 557 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 540 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033684 [exp] 533 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 531 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10033975 [exp] 528 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100100 [exp] 722 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 690 / 0 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G119400 [exp] 566 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 565 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 559 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 548 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 546 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 543 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 543 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 541 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001285 pacid=23166369 polypeptide=Lus10001285 locus=Lus10001285.g ID=Lus10001285.BGIv1.0 annot-version=v1.0 ATGGGCTGTATATGCTCCAAAAGAGCTAAAGAACCAGACCTAACCCCAACCAATAATAACAAAGATCATAGTAAGACCAATTTGGATGTTCAGCTTGTAG CCCCAACACCAGCAAAGACAGAAGAATTCCTCCACCACCAATCCTCCTACACGTCGAGCAGGCGGGGTTCGAGGCACTATTCAAGGCAGGCCTCGAAGGT CTCTAACCACAATCCGAACCCTGCAAGGATTGGGAAGAACAATGTCGTCGTTGTGGAGGAGAACAAGTCCGTCGAGAATGGTAAGCTCATTTCGAAATCG GCTAGGCACCACCAGAGGGGTACCACGATGGACCTTTCGAACGGATTCTATCTCCCTCGTGTCTCGAGGACTTTCAGCATGCCGTGTAATGGAGATGGAG ACATTGACCCCGGTTGGCCTCAATGGCTAACATCGGTAGCTGGTGATGCTGTTCGTGGCTGGCTTCCTCGTCAGGCCTGCTCGTTTGAGAAGCTCGAAAA GATTGGAGAAGGGACATACAGCACTGTGTACAAAGCCAGAGACCTGCAAACTGGGAAGATTGTTGCAATGAAGAAAGTAAGGTTTGTGAACATGGACCCT GAGAGTGTACGTTTCATGGCAAGGGAGATCAACATCTTGAGAAAACTTGATCACCCAAATGTGATGAAGCTAGAGTGCATCGTCACTTCGAGAATGTCGG AAAGCTTGTACTTAGTCTTCGAGTACATGGACCACGACCTCACCGGCCTCGCTACGAGGCCCGGTACCAAGTTCACAGAACAGCAGATAAAATGTTACAT GCAACAACTGCTTAGAGGCTTGCAGCACTGCCACGAGTGCGGGATCCTGCATCGAGACATCAAGGGATCGAATCTCCTGATCAACGACGACGGAGTTTTG AAGCTCGGGGACTTCGGATTGGCTAACTTCTACCGGGACTCGTCGCAACAGGCCTTGACGAGTCGGGTTGTTACTCTTTGGTACAGGGCACCTGAGCCCT TGCTTGGTGCTACTCAGTATGGAGTTGGGATTGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAACTCTTTGCTGGGAAGCATATCATGCCTGGAAGAAC CGAGGTGGAGCAAATGCACAAGATATTCAAGCTATGCGGCTCACCATCAGAAAATTACTGGCAGAAAACAAAGTTGCCACACGCGACGAGTTTCAAGCCT CAGCAGCCATACAAGCGTTGCCTAAGAGAAGCATTCAAGAACTTCCCACCTTCAGCTTTGGCTCTTGTGGATCAGCTGTTGTCGATCGAGCCTGAAGCTA GAGGAACAGCTGCTTCTGCTCTCGAAAGCCAGTTCTTCAACACAGAGCCGTTTCCTTGTGAACCTTCGGCTTTACCAAAGTATCCTCCTAGCAAGGAACT TGATGCCAAGGCCAGAGACGAGGAAGTAAGAAGAAAAATGGCAGAAGCAATGAAAAACCGGGGAGCCGAGTCGGTCAGAGGGCAAAGAACCGAGCGGGAA TCACCCAGCAAAGGGGTAGGGAAACCAAGCAACTGCCACAAGTATGAAGATGAATCAGGAGCAACAGGAGGAATTATGATGATGAGGCCAAATGCTGGTG GTGCCGGATACAAACACTCATGCTCAATGATCCACCCCGTTTCGGGCCTAACCAACCGGAACGAGTTCCGAAACCGAAACAACAGCATCATCATGTCAGA GCTCAGGACACACAATCATCCCACAAGGTCTCAACAACAGACAGTTGACATGTCGTTGAACATCAAGGACTCTTCAGTGGTGTATGTTCCACCGAGGAAG AACAGGATAAATTACTCAGGACCACTGATGCCACCAGGAGGGAACATGGAAGAGCTTCTGAAAGAGCATGAGAGACAAATCCAGCAAGCAGTAAGGAAAG CAAGGAGTAAAGACAACCTTAACGGCGGCGAAGACTGTCAGAATCAGCACCAGAACAGCAGATATGGAGGATGA
AA sequence Show only first row Show all	>Lus10001285 pacid=23166369 polypeptide=Lus10001285 locus=Lus10001285.g ID=Lus10001285.BGIv1.0 annot-version=v1.0 MGCICSKRAKEPDLTPTNNNKDHSKTNLDVQLVAPTPAKTEEFLHHQSSYTSSRRGSRHYSRQASKVSNHNPNPARIGKNNVVVVEENKSVENGKLISKS ARHHQRGTTMDLSNGFYLPRVSRTFSMPCNGDGDIDPGWPQWLTSVAGDAVRGWLPRQACSFEKLEKIGEGTYSTVYKARDLQTGKIVAMKKVRFVNMDP ESVRFMAREINILRKLDHPNVMKLECIVTSRMSESLYLVFEYMDHDLTGLATRPGTKFTEQQIKCYMQQLLRGLQHCHECGILHRDIKGSNLLINDDGVL KLGDFGLANFYRDSSQQALTSRVVTLWYRAPEPLLGATQYGVGIDLWSAGCILAELFAGKHIMPGRTEVEQMHKIFKLCGSPSENYWQKTKLPHATSFKP QQPYKRCLREAFKNFPPSALALVDQLLSIEPEARGTAASALESQFFNTEPFPCEPSALPKYPPSKELDAKARDEEVRRKMAEAMKNRGAESVRGQRTERE SPSKGVGKPSNCHKYEDESGATGGIMMMRPNAGGAGYKHSCSMIHPVSGLTNRNEFRNRNNSIIMSELRTHNHPTRSQQQTVDMSLNIKDSSVVYVPPRK NRINYSGPLMPPGGNMEELLKEHERQIQQAVRKARSKDNLNGGEDCQNQHQNSRYGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71530			Protein kinase superfamily pro...		Lus10001285 [exp]	0	1

Compare expression of checked genes

Lus10001285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.