Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33780 383 / 2e-133 Protein of unknown function (DUF179) (.1) AT3G29240 191 / 2e-58 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) AT3G19780 71 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009463 [exp] 633 / 0 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10005224 [exp] 184 / 6e-56 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030696 [exp] 78 / 1e-17 AT3G29240 139 / 8e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030695 [exp] 65 / 1e-12 AT3G29240 89 / 8e-22 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10013425 [exp] 59 / 5e-09 AT3G19780 743 / 0.0 unknown protein Lus10040970 [exp] 57 / 9e-09 AT3G19780 500 / 5e-157 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073000 [exp] 413 / 7e-145 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.013G100000 [exp] 400 / 4e-140 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1) Potri.004G125800 [exp] 182 / 5e-55 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Potri.007G070400 [exp] 55 / 5e-08 AT3G19780 770 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [flax] [poplar] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Lus10001286 pacid=23166371 polypeptide=Lus10001286 locus=Lus10001286.g ID=Lus10001286.BGIv1.0 annot-version=v1.0 ATGGATCTACTGAGAGTACAAGTGAAGAACACCAACCGGAGCCCTACAATCTTGCCTTTGAACTGCTCGATTTCGGCCAGCTGGCCAAAAGAGAGGAAGA CGACGATTGGGTGGCTGGAGATCAAGGTTTTCAACCGGAGTCTCTGCTCTTATCGCTGCCGCTCGTTGACCGTCGTTTCAGCTAAGGCGAAGAAGAACAA CGGCAACAACAATAACGATGATAATAATAATAACAAAGAGAATGAAAGTAGATCTCATCGAGATGGCGAAGTGTCGAAAGGGAAAAAATCACCGTCCGAT GGAAACAAATCGAACAACAGTTCTTCCCAGAATCCTGTTCGTGCCAGCTCAGACTGGAGGGAGTTTAGGGCAAACTTGGTTGCCAAGGAACAGGCGTACA AGTCCGAGACTTCCACTCTCGAACCGAAGCCACTGGGCCTGAAATGGGCGCATCCCATATCAGTACCTGAAAACGGATGCGTCCTCGTAGCCACGGAGAA ACTTGACGGACAACGAACATTCGAGAGAACCGTGGTCCTCCTCTTAAGGTCCGGAACCAGCCATCCACAAGAAGGACCATTCGGCATCGTCATCAACCGT CCACTCAACAAAAAGATCAAGCACATGAAACCGAACAACAACGAGCTAGCAACCACGTTCTCGAACTGTGCTCTTCATTTCGGTGGCCCTCTAGAGGCGA GCATGTTCTTGTTGAAAACAGGAGAGAAGACCAAGCTTCCCGGGTTCGAAGAAGTGGTCCCCGGATTATGTTTCGGTGCCAGGAACAGTCTGGACGATGC TGCAGAGCTTGTTAAAAAGGGATTGCTAAAGCCTCAGGATTTTCGATTCTTTGTCGGGTACGCTGGGTGGCAGCTCGATCAGCTGAGGGAGGAGATCGAG TCGGAGTTTTGGCACGTGGCTTCGTGCAGCTCGAATCTGATCTGTGGCGGATCTGTACAGTCTGGGAATCTGTGGGAAGAGATTCTGCAGCTTATGGGAG GTGACTACTCCGAATTGAGCCGGAAGCCTAAGCAAGACATGTGA
AA sequence Show only first row Show all	>Lus10001286 pacid=23166371 polypeptide=Lus10001286 locus=Lus10001286.g ID=Lus10001286.BGIv1.0 annot-version=v1.0 MDLLRVQVKNTNRSPTILPLNCSISASWPKERKTTIGWLEIKVFNRSLCSYRCRSLTVVSAKAKKNNGNNNNDDNNNNKENESRSHRDGEVSKGKKSPSD GNKSNNSSSQNPVRASSDWREFRANLVAKEQAYKSETSTLEPKPLGLKWAHPISVPENGCVLVATEKLDGQRTFERTVVLLLRSGTSHPQEGPFGIVINR PLNKKIKHMKPNNNELATTFSNCALHFGGPLEASMFLLKTGEKTKLPGFEEVVPGLCFGARNSLDDAAELVKKGLLKPQDFRFFVGYAGWQLDQLREEIE SEFWHVASCSSNLICGGSVQSGNLWEEILQLMGGDYSELSRKPKQDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	0	1
AT1G03250			unknown protein		Lus10012370 [exp]	1.0	0.9220
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	1.4	0.9118
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	2.4	0.9104
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	3.2	0.8946
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	7.2	0.9027
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10035872 [exp]	10.2	0.8597
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	10.5	0.8698
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	11.2	0.8557
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	13.0	0.8808
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	15.5	0.8684

Compare expression of checked genes

Lus10001286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.