Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 197 / 2e-60 Major facilitator superfamily protein (.1) AT1G72130 193 / 5e-60 Major facilitator superfamily protein (.1.2) AT1G72140 194 / 2e-59 Major facilitator superfamily protein (.1) AT1G72120 186 / 3e-56 Major facilitator superfamily protein (.1) AT1G72125 184 / 3e-55 Major facilitator superfamily protein (.1) AT1G22550 179 / 2e-53 Major facilitator superfamily protein (.1) AT1G22570 174 / 9e-52 Major facilitator superfamily protein (.1) AT5G14940 164 / 6e-48 Major facilitator superfamily protein (.1) AT3G54450 160 / 3e-46 Major facilitator superfamily protein (.1) AT2G37900 149 / 3e-42 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009462 [exp] 319 / 1e-107 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 199 / 1e-60 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 197 / 7e-59 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 159 / 6e-46 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10014510 [exp] 156 / 1e-44 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10039465 [exp] 155 / 1e-44 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10005603 [exp] 153 / 9e-44 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1) Lus10032177 [exp] 152 / 3e-43 AT5G14940 597 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 148 / 7e-42 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079700 [exp] 204 / 1e-62 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 194 / 2e-59 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 194 / 3e-59 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 190 / 2e-57 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 187 / 2e-56 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 181 / 4e-54 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 179 / 1e-53 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 174 / 8e-52 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 170 / 3e-50 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 169 / 1e-49 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10001287 pacid=23166382 polypeptide=Lus10001287 locus=Lus10001287.g ID=Lus10001287.BGIv1.0 annot-version=v1.0 ATGTTCTTCACAAAGCAAGGCTCTACCCTTGACAGAACCATCTTCCCAAACTTCCAAATCCCACCAGCTTCCCTTCAGTTCTTCATAGGCACTTCCATCA TCATCTTCGTCCCCGTCTACGACCGCCTCTTCGTCCCCATCATGGCATCCATAACAGAGGATAGGAACGGGGTGTTCCTATCTCTCCTCTCCATGGCCAT TGCTGCCGTGGTCGAGACCAAGAGACTCAAGACGGAACACAACAAGCAACCAACAATGAGCATATGGTGGCTGGTTCCTCAGTACATAGTCTGCGGGGTT TCAGACGTTTTCGCCATTGTCGGGCTCCAGGAGTTCTTCTACGAAAAGGTGCCGAACGAGTTCAAGAGCTTGGGGCTGTCGTTTTACCTTGGCGTGTTGG GAGTTGAAAGCTTTCTCAGTAGCTTCATTGTCTCTCTGGTTGATCGGATAACTTCAGGTGGTGGAAGATGGTTTGATGATGATCTGAATAAGGCGCATCT TGACTACTTCTACTGGCTTCTTGCTCTTCTTAGTGGCCTTTGGTTGGTTGGTTTCTTGTGGTTTGGTAGAGCTTATGTTTACAGGCAGAAATAG
AA sequence Show only first row Show all	>Lus10001287 pacid=23166382 polypeptide=Lus10001287 locus=Lus10001287.g ID=Lus10001287.BGIv1.0 annot-version=v1.0 MFFTKQGSTLDRTIFPNFQIPPASLQFFIGTSIIIFVPVYDRLFVPIMASITEDRNGVFLSLLSMAIAAVVETKRLKTEHNKQPTMSIWWLVPQYIVCGV SDVFAIVGLQEFFYEKVPNEFKSLGLSFYLGVLGVESFLSSFIVSLVDRITSGGGRWFDDDLNKAHLDYFYWLLALLSGLWLVGFLWFGRAYVYRQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22540			Major facilitator superfamily ...		Lus10001287 [exp]	0	1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	2.2	0.8833
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10025032 [exp]	2.4	0.8577
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10019697 [exp]	4.7	0.8152
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	5.2	0.8684
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	5.8	0.8788
					Lus10011631 [exp]	8.5	0.8469
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	8.9	0.8458
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10024776 [exp]	9.2	0.8571
					Lus10014031 [exp]	9.4	0.8507
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028863 [exp]	12.2	0.8659

Compare expression of checked genes

Lus10001287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.