Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22570 118 / 2e-32 Major facilitator superfamily protein (.1) AT1G22550 116 / 8e-32 Major facilitator superfamily protein (.1) AT1G72125 116 / 9e-32 Major facilitator superfamily protein (.1) AT1G72120 109 / 3e-29 Major facilitator superfamily protein (.1) AT1G22540 107 / 1e-28 Major facilitator superfamily protein (.1) AT1G72140 90 / 3e-22 Major facilitator superfamily protein (.1) AT1G62200 87 / 3e-21 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 85 / 2e-20 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G72130 82 / 1e-19 Major facilitator superfamily protein (.1.2) AT2G40460 82 / 2e-19 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009462 [exp] 166 / 4e-50 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 108 / 1e-28 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 100 / 4e-26 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 94 / 1e-23 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 89 / 7e-22 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10040698 [exp] 86 / 1e-20 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011055 [exp] 86 / 1e-20 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 85 / 2e-20 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 85 / 2e-20 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106600 [exp] 119 / 1e-32 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 115 / 2e-31 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 114 / 6e-31 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 113 / 1e-30 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 108 / 9e-29 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 107 / 2e-28 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 105 / 5e-28 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 104 / 2e-27 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 102 / 7e-27 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 87 / 3e-21 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10001288 pacid=23166383 polypeptide=Lus10001288 locus=Lus10001288.g ID=Lus10001288.BGIv1.0 annot-version=v1.0 ATGTCCATACAAACAACAAACTCGAAAGAGATAGGGCAAGGAGGGCACAAGCCTTGCGTGCAGGCATTCGAAGCTGACCAATTCGACGAGCACAGCTCGA AAGAGATAGAGCAAAGATCCTCGTTCTTCAACTGGTGGTACTGTAGCATGGCGATTGGGGTCAACGTGGCACTTCTTGTAGTGGTGTACGTTCAAGACAA CTTGAATTGGGCTGTTGGGTTTGCAATCCCTTGCTTGACCATGCTTGCTAGTCTTGCCACTTTCTTGCTTGGCAGGACGACTTACAGGTTCAGCATAAAC GGAAAGAGGACATAA
AA sequence Show only first row Show all	>Lus10001288 pacid=23166383 polypeptide=Lus10001288 locus=Lus10001288.g ID=Lus10001288.BGIv1.0 annot-version=v1.0 MSIQTTNSKEIGQGGHKPCVQAFEADQFDEHSSKEIEQRSSFFNWWYCSMAIGVNVALLVVVYVQDNLNWAVGFAIPCLTMLASLATFLLGRTTYRFSIN GKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72125			Major facilitator superfamily ...		Lus10001288 [exp]	0	1
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029379 [exp]	1.4	0.8577
					Lus10034545 [exp]	4.7	0.8018
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	5.7	0.8018
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	6.6	0.8018
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	7.4	0.8018
AT5G67090			Subtilisin-like serine endopep...		Lus10002044 [exp]	8.1	0.8018
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10025872 [exp]	10.6	0.7555
AT1G08790			Protein of unknown function (D...		Lus10042536 [exp]	10.6	0.7209
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10022732 [exp]	11.0	0.6823
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10042979 [exp]	13.5	0.6390

Compare expression of checked genes

Lus10001288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.