Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 896 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 823 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 649 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT1G58060 595 / 0 RNA helicase family protein (.1) AT1G58050 525 / 2e-166 RNA helicase family protein (.1) AT4G24400 286 / 1e-87 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT2G26980 285 / 1e-87 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 287 / 2e-87 Ca2+regulated serine-threonine protein kinase family protein (.1) AT3G17510 280 / 8e-85 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G01140 277 / 1e-83 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012696 [exp] 998 / 0 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035801 [exp] 957 / 0 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10036582 [exp] 904 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10028115 [exp] 278 / 1e-83 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 276 / 4e-83 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10019411 [exp] 274 / 3e-82 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10030210 [exp] 271 / 1e-81 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10024448 [exp] 270 / 1e-80 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 265 / 5e-79 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115900 [exp] 941 / 0 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 929 / 0 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.013G090800 [exp] 728 / 0 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.004G222900 [exp] 641 / 0 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.001G222600 [exp] 286 / 4e-87 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.010G002500 [exp] 281 / 5e-85 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.009G021000 [exp] 278 / 3e-84 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.014G104200 [exp] 275 / 8e-83 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 275 / 1e-82 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 273 / 4e-82 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0573 [flax] [poplar] KA1-like PF02149 [flax] [poplar] KA1 Kinase associated domain 1 CL0021 [flax] [poplar] OB PF07717 [flax] [poplar] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain CL0214 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10001290 pacid=23165456 polypeptide=Lus10001290 locus=Lus10001290.g ID=Lus10001290.BGIv1.0 annot-version=v1.0 ATGGTTGAAGATTGGATTTCTCAAGCAAATGCAAGGCAACGTCGAGGTCGAGCTGGACGTGTAAAACCCGGTGTCTGCCTTTGCTTGTATACACGTCATC GCTTCGAGAAACTAATGCGTCCTTACCAGGTTCCTGAAATGCTACGAATGCCTTTGGTTGAGTTGTGCCTACAAATCAAGTTGCTTTCATTGGGCCACAT AAAGCCTTTTCTATCAAAGGCTTTAGAGCCACCAACAGAAGAGGCTGTTGCCTCCGCAATTTCTTTATTATATGAGGTTGGAGCCCTAGAAGGAGATGAA GCGTTGACACCACTGGGTCATCATTTAGCAAAACTTCCAGTTGATGTATTGGTCGGAAAGATAATGCTTTATGGAGCAATATTTGGTTGTTTATCTCCGA TACTCTCAATTTCTGCATTTCTCAGCTACAAGTCACCGTTTGTGTATCCCAAAGACGAGAAACAAACTGCTGAGAGAGCCAAACTTGCTCTGTTGAATTA TAAAGTAGATGGCACAGTCGATTCAATTGGAAATGATGGGCAATCTGACCATCTAGTCATGATGGTAGCATACAGAAAATGGGCAAGAATATTGCAGGAG AAAGGCGTCAGAGCAGCCGCACAGTTCTGCAATTCATTCTTTCTTAGCAGTTCAGTCATGTACATGATAAGAGACATGAGGGTTCAGTTTGGGACGCTGT TAGCTGACATCGGGCTGATCGATCCCCCAAGGAACCGACAGACCCAGAGCTCAGTGAAAAGGAAAGAGGATCTAGACCGTTGGTTGTCTGATACTTCACA ACCATTCAACATGTACTCTCATCATTCATCAATCGTGAAGGCGATTCTCTGTGCAGGGTTATACCCAAACGTTGTTGCTACAGAACAAGGCATTTCTGGT GCTGCACTTAACAACCTGAAACAGTCTCAAAATTCTGCACGTAAAGGTTCTTCAATATGGTACGACGGAAGAAGAGAAGTTCATATCCACCCTTCTTCAG TCAACTCCAACCTAAAGACATTTCAATACCCTTTTGCCGTCTTTCTTGACAAGGTGGAGACAAATAGAGTGTTTATACGCGACACGACGGTTATATCTCC GTTTTCACTCTTGCTGTTTGGTGGCTCCATCAATATCCAACACCAGAGTGGATTGGTTACTGTAGATGGATGGCTAAAGCTCACAGCTCCAGCACAAACT GCCGTGCTATTCAAGGAACTCCGCCTAACCCTTCATTCATTGTTGAGGGAGCTAATCCAGAAGCCAGAGGAAATTGAAGAGGAGGAGTGCCGGGGAGCAC CATTTGCCTCCTTCGTTGGCTTCCGCGACCAAATTCACCTTCTGTTCTACATCGGCGTAGCAGCTGTTCGACTCCAAGAGAGCATGGATGGATCAAGTCA TCGAGGCAGCAGTAATGTGGATATGTACTTGCCCAATTACAAGCTTGGTAAAACTCTTGGAATTGGTTCCTTTGGCAAAGTGAAAATTGCTGAGCATGCC TTGACTGGGCACAAGGTTGCCATCAAGATACTTAATCGCCGTAAGATTAAAAATATGGACATGGATGAAAAAGTGAGAAGAGAAATCAAAATCTTAAGAT TGTTTATGCATCCTCATATCATACGGCTATATGAGGTTATTGAAACTCCGACTGATATATACCTTGTGATGGAGTATGTCAAATCTGGGGAACTGTTTGA TTATATTGTGGAGAAAGGGAGGTTGCAGGAAGACGAGGCCCGCAATTTTTTCCAGCAGATTATTTCTGGCGTTGAATACTGCCATAGGAATATGGTTGTT CACAGAGATCTTAAGCCTGAAAATTTGCTATTGGATTCCAAATGCAATGTCAAAATAGCTGATTTTGGGTTGAGCAATATAATGAGAGATGGCCACTTTT TGAAGACAAGTTGTGGTAGCCCAAACTATGCAGCCCCAGAGGTCATCTCTGGGAAATTGTATGCTGGGCCTGAAGTGGATGTGTGGAGTTGTGGAGTCAT CTTGTATGCTCTTCTTTGTGGTACCCTTCCATTTGATGATGAAAACATTCCCAACCTCTTCAAAAAAATAAAGGGAGGGATATACACTCTTCCTAGTCAT TTATCACCGGGTGCAAGAGATCTTATCCCTAGGATGCTTGTGGTTGATCCAATGAAGCGAATGGCCATTCCAGAAATTCGTCAGCATCCATGGTTCCAAG CTCGTCTCCCACGCTATTTGGCTGTTCCTCCACCAGACACCATGCAACAAGCTAAAAAGATTGATGAAGAGATTCTGCAGGAAGTGATTAGAATGGGATT TGACAGGAACCAACTGGTTGAATCTCTTCGCAACAGAATACAGAATGAGGGTACTGTGGCATACTATTTGCTTCTGGACAATCGGTTCCGGGTTTGTAAT GGATATCTTGGAGCTGAATTCCAAGAAACTATGGAAAGTGCTTACAATCGTGCGCATCTCAGTGAACCTGCTTCTTCGCCAGTTGGTCATCGCCCTCCTG GGTATATGGAGTACCAAGGGACTGGATTGAGGTCACAATATCCTGTTGATAGAAAATGGGCTCTTGGACTTCAGTCTCGAGCCCACCCCAGAGAAATAAT GACGGAAGTACTGAAAGCTTTGCAAGAACTGAACGTAGGCTGGAAGAAGATCGGTCACTATAACATGAAGTGCAGGTGGTTTCCTGGCAGTCCTGGACAC CTTGAAGGCATGGGAAATGATGGTCCGGCCAATAATAATTTCTTTGGGGATGAATCTTCCATTATTGAGAATGACGGAGTGACCAGAGCACCAAACGTTG TGAAATTTGAAGTGCAGCTCTACAAGACTCGCGAGGAGAAGTACTTGCTGGATATGCAGAGAGTGCAAGGACCTCAGTTTCTCTTCTTAGACCTTTGTGC GGCTTTCCTTGCGCAGCTCCGCGTGCTTTAG
AA sequence Show only first row Show all	>Lus10001290 pacid=23165456 polypeptide=Lus10001290 locus=Lus10001290.g ID=Lus10001290.BGIv1.0 annot-version=v1.0 MVEDWISQANARQRRGRAGRVKPGVCLCLYTRHRFEKLMRPYQVPEMLRMPLVELCLQIKLLSLGHIKPFLSKALEPPTEEAVASAISLLYEVGALEGDE ALTPLGHHLAKLPVDVLVGKIMLYGAIFGCLSPILSISAFLSYKSPFVYPKDEKQTAERAKLALLNYKVDGTVDSIGNDGQSDHLVMMVAYRKWARILQE KGVRAAAQFCNSFFLSSSVMYMIRDMRVQFGTLLADIGLIDPPRNRQTQSSVKRKEDLDRWLSDTSQPFNMYSHHSSIVKAILCAGLYPNVVATEQGISG AALNNLKQSQNSARKGSSIWYDGRREVHIHPSSVNSNLKTFQYPFAVFLDKVETNRVFIRDTTVISPFSLLLFGGSINIQHQSGLVTVDGWLKLTAPAQT AVLFKELRLTLHSLLRELIQKPEEIEEEECRGAPFASFVGFRDQIHLLFYIGVAAVRLQESMDGSSHRGSSNVDMYLPNYKLGKTLGIGSFGKVKIAEHA LTGHKVAIKILNRRKIKNMDMDEKVRREIKILRLFMHPHIIRLYEVIETPTDIYLVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVV HRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSH LSPGARDLIPRMLVVDPMKRMAIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVIRMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVCN GYLGAEFQETMESAYNRAHLSEPASSPVGHRPPGYMEYQGTGLRSQYPVDRKWALGLQSRAHPREIMTEVLKALQELNVGWKKIGHYNMKCRWFPGSPGH LEGMGNDGPANNNFFGDESSIIENDGVTRAPNVVKFEVQLYKTREEKYLLDMQRVQGPQFLFLDLCAAFLAQLRVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10001290 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026393 [exp]	28.6	0.7591
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	29.3	0.7375
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	36.4	0.6977
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	41.0	0.7520
AT1G32420			F-box and associated interacti...		Lus10011210 [exp]	68.9	0.6655
AT3G02420			unknown protein		Lus10003064 [exp]	75.0	0.6994
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	77.2	0.7029
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	80.5	0.7004
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	83.7	0.7059
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10040775 [exp]	86.5	0.6771

Compare expression of checked genes

Lus10001290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.