Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10950 878 / 0 AtTMN1 transmembrane nine 1 (.1) AT1G14670 375 / 7e-123 Endomembrane protein 70 protein family (.1) AT2G01970 373 / 5e-122 Endomembrane protein 70 protein family (.1) AT5G37310 369 / 9e-121 Endomembrane protein 70 protein family (.1) AT1G08350 306 / 1e-96 Endomembrane protein 70 protein family (.1.2) AT2G24170 258 / 2e-77 Endomembrane protein 70 protein family (.1) AT3G13772 256 / 1e-76 AtTMN7 transmembrane nine 7 (.1) AT5G25100 248 / 1e-73 Endomembrane protein 70 protein family (.1.2) AT5G10840 246 / 5e-73 Endomembrane protein 70 protein family (.1) AT1G55130 243 / 5e-72 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012697 [exp] 935 / 0 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10001368 [exp] 930 / 0 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 850 / 0 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10042286 [exp] 370 / 7e-121 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 369 / 2e-120 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031308 [exp] 368 / 4e-120 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 302 / 3e-93 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 286 / 2e-88 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10026254 [exp] 254 / 6e-76 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G218300 [exp] 871 / 0 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G015300 [exp] 869 / 0 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.017G144181 [exp] 371 / 3e-121 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 367 / 5e-120 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 358 / 2e-116 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 295 / 5e-92 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 274 / 3e-84 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G018400 [exp] 253 / 1e-75 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 251 / 7e-75 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 250 / 1e-74 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10001291 pacid=23165462 polypeptide=Lus10001291 locus=Lus10001291.g ID=Lus10001291.BGIv1.0 annot-version=v1.0 ATGTCCTCCTTCGCTGTCCCAACCCGATATCTCCACATCTTCTTCTACGCAGTGTCTCTCATCTCTCCTCTCGTACTCGCCTCCGATTCAGATCACAAGT ATCAACCAGAAGAACCTGTCACTCTTTGGGTAAACAAAGTGGGTCCTCATAATAATCCACAAGAAACATACAACTACTACAGCCTTCCATTCTGCCGTCC AGCTAGAAATTCTGCTCACAAATGGGGTGGCCTTGGTGAAGTTCTAGGAGGAAATGAACTTATTGATAGTTTTCTTGACATTAAGTTTCAGAAGAATGTA GAAAAAGGTTCCATCTGTCAGCTTGACCTTGATGAAGCTAAGGTCACACAATTCAAAGATGCTATTGAGAACAGTTACTGGTTTGAGTTCTTCATGGATG ACTTGCCATTATGGGGCTTTGTGGGGGAGTTGCATCCTGATAAGAACAGTGACAGTGGCAAGCATGTTCTGTACACTCATAAGACTATTACAGTTAAATA TAATAAAAATCAGATAATTCATGTCAATCTTACTCAAGAGAGTGCCAAACCTCTTGAACCAGGGAGAAGTTTGGAAATGACATACTCTGTCAAATGGATT CCGACTAATGTTTCTTTTGCTCGTCGCTTTGATGTCTACTTGGATTACCCTTTCTTTGAGCACCAGATCCATTGGTTCTCCATTTTCAATTCTTTCATGA TGGTCATCTTTCTCACTGGGCTGGTCTCTATGATATTGATGCGTACTCTGAGAAATGACTATGCAAAGTATGCTCGAGAAGATGATGATCTGGAGTCTTT GGAAAGAGATGTTAGCGAAGAGTCTGGCTGGAAGCTTGTCCATGGAGATGTTTTCCGCCCAACTCGCAATTTGGCTCTTCTGTCAGCGGTTGTTGGAACT GGTGCTCAACTTGTGCTGCTTGTGCTTCTTGTCATCTTATTGGCTATTATTGGCATGCTGTATGTTGGGAGAGGAGCAATTGTGACGACTTTCATTGTAT GCTATGCTCTTACTTCGTTCATTTCTGGTTATGTTAGCGGAGGGATGTATTCCCGCCATGGAGGTAAAAGCTGGATAAAAGCAATGATCCTCACAGCTTC TTTGTTCCCATTTATGTGCTTTGGGATTGGCTTTGTTCTGAACACAATTGCCATATTCTATGGTTCCCTAGCTGCCATCCCATTTGGTACTATGGTGGTT GTATTTGTTATCTGGGCATTCATATCTTTCCCTCTAGCACTTCTTGGTACAGTTGTCGGCAGAAATTGGTCGGGTGCTCCAAACAACCCCTGCCGAGTGA AGACCATTCCTCGTCCAATTCCAGAGAAGAAATGGTACCTAACTCAATCAGTAGTATCAATGATGGGCGGACTGCTACCCTTTGGAAGCATATTCATTGA GATGTACTTTGTCTTCACTTCATTTTGGAATTACAAGGTATACTACGTGTATGGCTTCATGCTGCTTGTTTTCCTGATTCTCGTCATTGTAACTGTTTGC GTGACAATCGTGGGGACATATTTCTTGCTAAATGCTGAGAACTACCATTGGCAATGGACCTCATTCTTCTCTGCTGCCTCAACTGCTGTGTATGTATACT TGTATTCTATTTACTATTACTACGTGAAGACGAAGATGTCGGGCTTCTTCCAGACCAGCTTCTACTTCGGATACACTTTGATGTTCTGTCTTGGCCTTGG CATTCTCTGTGGTGCTGTTGGCTATCTAGGCTCAAACTTGTTTGTTAGGAGGATCTACAGAAACATCAAGTGCGACTAG
AA sequence Show only first row Show all	>Lus10001291 pacid=23165462 polypeptide=Lus10001291 locus=Lus10001291.g ID=Lus10001291.BGIv1.0 annot-version=v1.0 MSSFAVPTRYLHIFFYAVSLISPLVLASDSDHKYQPEEPVTLWVNKVGPHNNPQETYNYYSLPFCRPARNSAHKWGGLGEVLGGNELIDSFLDIKFQKNV EKGSICQLDLDEAKVTQFKDAIENSYWFEFFMDDLPLWGFVGELHPDKNSDSGKHVLYTHKTITVKYNKNQIIHVNLTQESAKPLEPGRSLEMTYSVKWI PTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPTRNLALLSAVVGT GAQLVLLVLLVILLAIIGMLYVGRGAIVTTFIVCYALTSFISGYVSGGMYSRHGGKSWIKAMILTASLFPFMCFGIGFVLNTIAIFYGSLAAIPFGTMVV VFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTQSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILVIVTVC VTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	0	1
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	1.0	0.9537
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	2.0	0.9448
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	2.8	0.9166
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	3.0	0.9346
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	3.6	0.9101
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	4.2	0.9248
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	4.9	0.9302
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10029001 [exp]	5.3	0.9199
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	5.9	0.9278
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	7.3	0.9042

Compare expression of checked genes

Lus10001291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.