Plant FIBer expression Database

Lus10001292 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11000 80 / 5e-19 ATMLO4, MLO4 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012698
[exp]
136 / 1e-39 AT1G11000 305 / 2e-97 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1)
Lus10001370
[exp]
108 / 2e-29 AT1G11000 406 / 1e-136 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1)
Lus10015461
[exp]
102 / 2e-28 AT1G11000 200 / 6e-61 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G218500
[exp]
94 / 5e-24 AT1G11000 735 / 0.0 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1)
Potri.005G111400
[exp]
41 / 2e-05 AT1G11000 434 / 8e-147 MILDEW RESISTANCE LOCUS O 4, Seven transmembrane MLO family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03094 Mlo Mlo family
Representative CDS sequence
>Lus10001292 pacid=23165451 polypeptide=Lus10001292 locus=Lus10001292.g ID=Lus10001292.BGIv1.0 annot-version=v1.0
ATGGGATCAAGCTGCAGGAAAGCCTTAGTTTCCGAGAGCGTAAGAGACTCGCTACACAGCTGGTGCAAGCGAGTTAAGGAGAGGTCGAAGCGCGAAGCTG
CCATGTCGATAGCCACACGATCAGCGTGCTCTCTCGACACTGCCACCATCGACGAAGGGGATGAGGATATCACCGTTGCATCTCGCTCCTCCAGGTCTTT
GTCCCCGAACTCCCTCAATGAGATCACCGTAGTCGATGAGACGGGCGATGAACAATGA
AA sequence
>Lus10001292 pacid=23165451 polypeptide=Lus10001292 locus=Lus10001292.g ID=Lus10001292.BGIv1.0 annot-version=v1.0
MGSSCRKALVSESVRDSLHSWCKRVKERSKREAAMSIATRSACSLDTATIDEGDEDITVASRSSRSLSPNSLNEITVVDETGDEQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11000 ATMLO4, MLO4 MILDEW RESISTANCE LOCUS O 4, S... Lus10001292
[exp]
0 1
Lus10035468
[exp]
1.0 0.7949
Lus10024679
[exp]
4.2 0.7382
AT1G13290 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIV... Lus10035044
[exp]
4.6 0.7157
AT1G10370 GST30B, ATGSTU1... GLUTATHIONE S-TRANSFERASE U17,... Lus10009746
[exp]
12.8 0.5869
AT1G80245 Spc97 / Spc98 family of spindl... Lus10018344
[exp]
17.0 0.5845
AT2G26975 Ctr copper transporter family ... Lus10023045
[exp]
18.4 0.6576
AT1G24590 AP2_ERF ESR2, DRNL, SOB... FOR SUPPRESSOR OF PHYTOCHROMEB... Lus10017907
[exp]
20.4 0.6909
AT4G35150 O-methyltransferase family pro... Lus10012408
[exp]
20.4 0.6753
AT2G32030 Acyl-CoA N-acyltransferases (N... Lus10032323
[exp]
22.2 0.6526
AT5G43190 Galactose oxidase/kelch repeat... Lus10007740
[exp]
27.5 0.6972

Lus10001292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.