Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1069 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 967 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 934 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11840 928 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 924 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11830 899 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 687 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 681 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 664 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 483 / 8e-159 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012699 [exp] 1756 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10041855 [exp] 1105 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 1043 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 947 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 945 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 939 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 929 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 894 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 892 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015000 [exp] 1395 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 1169 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1151 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 1097 / 0 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 1079 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 944 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 929 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 911 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.018G131200 [exp] 699 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.001G193000 [exp] 694 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif CL0479 [flax] [poplar] PF12357 [flax] [poplar] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Lus10001293 pacid=23165455 polypeptide=Lus10001293 locus=Lus10001293.g ID=Lus10001293.BGIv1.0 annot-version=v1.0 ATGGCTAGTGAAGTCGACATAACAAGAGCACTACCACCACCACGAATTAGTACATCCCAAGAACAGCAATCCACAAGAGGCAGCAACAGCAACAACAGAA CATCAACATCAAAACAACCCACGTTCATCCACGGCGAGCTCGACATATGGATCCATGAAGCCAAATCCTTACCCAACATGGACTTAGCATCCGAACACAT GAGGAGGTGCTTCACCATCCTGGGATCCCCGTGCTCAAAGCGCCACACGAGAAAATCCGGGCGCCACTCAATGATCACGAGCGACCCTTATGTGTCTGTA TGCCTGGCCGGAGCCACCGTGGCACAAACGCGAGTCATCCCGAATTGCGAGAACCCGTTATGGGACGAGCACTTCACCGTCCCCGTGGCCCATCCCATAA TCAAAGTTGAGTTCCATGTCAAGGACAACGACGTCCTCGGTGCCCAAATGATCGGAGTTGTTGAAGTCCCCGTCGAACAAATCACTCCAGGTGACAAGAT CGACGACTGGTTCCAACTCGTAGGCCACGCGGGAAACTGCTTAAAACCGTACCCAGAGCTCCGAGTCTCGATCCAGTTCAAGCCAGTCGGGGACAACCCG TTGTACAAGGACAGCTACGGAGGAGTATCAAACACCTATTTCCCACTAAGGAAAGGTGGGATGGTGACATTGTACCAAGATGCTCATGTCCCAGATGGGA TGATCCCAGAGATATTGCTTGATGGTGGTAAAGTGTACCAGCATCACAAGTGCTGGGAGGAGATGTGCCATGCCATATTGGAAGCTCACCACCTTATCTA TGTGATTGGTTGGTCCATCTACCACAGGGTTAAGCTTGTTAGGGAACCCACTAGGGCTCTGCCCTCTGGTGGTGAGCTAACCCTAGGTGAGCTCTTGAAG TACAAGTCTCAGGAAGGTGTTAGGGTTGTGATGCTGATTTGGGATGACAAGACTTCTCATGACAAGTTCTTGCTTAAAACGGAAGGTGTAATGGGGACTC ATGATGAGGAAACTAAGAAGTTTTTCAAGCACTCTACTGTTCACTGTGTTCTTGCTCCTCGTTACGCCAGCAACAAGCTCAGCATTTTCAAGCAGCAGGT GGTTGGAACCCTATTCACTCATCACCAGAAGTGTGTGATCCTTGACACCCAAGCTTCCGGCAACAACAGGAAGATCACATCTTTCATCGGCGGATTGGAC CTATGCGACGGGAGATACGACACTCCTGATCACAGGATGTTTCAAGATCTCGACACTATCTTCCTTAACGACTTCCACAACCCAACGTTTCCATCCAATG CAAGGAGTCCACGACAGCCGTGGCACGATCTGCACTGCAAGATAGAAGGCCCGGCAGCTTACGACATATTGACTAATTTCGAACAGAGATGGAGGAAAGC TCAGAAATGGAGGGATTTCAGGCTGAAGAAGGTCACCCATTGGCACGACGATGCATTGCTACGTCTGGATCGGATTTCCTGGATATTGAGTCCCTCGGTG GACAATGGCGATAAGGATGTGTACATTTGTGACGAATCGGATCCTGAGCGTTGGCATGTACAGGTTTTCAGATCTATCGATTCTGGTTCGGTTCGAGGCT TCCCAAAAGCCGTTGGAGAAGCAGCTGCTCAGAATCTTGTTTGTGGGAAGAACTTGAAAGTAGAGAAAAGTATTCATACAGCATATATCAAAGCAATCAG ATCAGCTCAACACTTCATATACATAGAGAACCAATATTTTCTTGGATCTTCATTCTGTTGGCCATCATACAAAAATGCAGGTGCGGATAACCTAGTACCG ATGGAAATAGCGTTGAAAATTGCGAGCAAGATCAATGCCAACGAGCGGTTCTCGGCTTATGTGGTCATACCCATGTGGCCAGAGGGTTCTCCTACCAGTG CTGCTGTTCAGGAGATCTTGTTTTGGCAGGGACAAACGATGATGATGATGTACAAGATAATAGCAAATGCACTTGAGAAAGCTGGGTTGCTGGAGGCTTA CCATCCACAAGACTACTTGAATTTCTTCTGCCTTGGCAAAAGAGAGGACAAGATTCAGGATTCTTCCAACTTGAATCCCCAGACTGATAACCGTGCTTTG GCAGCATCCCAAAAGTATCGAAGATTCATGATATACGTACACGCCAAAGGGATGATCGTGGACGATGAGTACGTGATCATAGGCTCTGCAAACATCAACC AGAGATCCTTAGACGGATCAAGGGACACCGAAATTGCTATGGGAGCTTATCAGCCAGCTTACACATGGTCTGCCAAACAGTCTCACCCCCGCAGCCAGAT ATACGGGTACCGGATGTCGCTGTGGGCGGAACACATGGGAGAGTTGGAGGAAGAATACAGGGAACCGCAGAGCATCAAGTGCATGAAGAGTGTGAACAAG ATTGCCAAGAGCAACTGGAAGGCCTTTGTCGCCGAAGAGATGATGCCGATGAAAGGACACTTGATGCAGTACCCTATTCAGGTCAGCAGAGATGGTAGAG TCACTGCATTGCCCGGCCACGAATCCTTCCCCGATGTCGGGGGCAAGGTCCTCGGTTCTCCCACCAACCTCCCGGATTCCCTAACCACCTAA
AA sequence Show only first row Show all	>Lus10001293 pacid=23165455 polypeptide=Lus10001293 locus=Lus10001293.g ID=Lus10001293.BGIv1.0 annot-version=v1.0 MASEVDITRALPPPRISTSQEQQSTRGSNSNNRTSTSKQPTFIHGELDIWIHEAKSLPNMDLASEHMRRCFTILGSPCSKRHTRKSGRHSMITSDPYVSV CLAGATVAQTRVIPNCENPLWDEHFTVPVAHPIIKVEFHVKDNDVLGAQMIGVVEVPVEQITPGDKIDDWFQLVGHAGNCLKPYPELRVSIQFKPVGDNP LYKDSYGGVSNTYFPLRKGGMVTLYQDAHVPDGMIPEILLDGGKVYQHHKCWEEMCHAILEAHHLIYVIGWSIYHRVKLVREPTRALPSGGELTLGELLK YKSQEGVRVVMLIWDDKTSHDKFLLKTEGVMGTHDEETKKFFKHSTVHCVLAPRYASNKLSIFKQQVVGTLFTHHQKCVILDTQASGNNRKITSFIGGLD LCDGRYDTPDHRMFQDLDTIFLNDFHNPTFPSNARSPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAQKWRDFRLKKVTHWHDDALLRLDRISWILSPSV DNGDKDVYICDESDPERWHVQVFRSIDSGSVRGFPKAVGEAAAQNLVCGKNLKVEKSIHTAYIKAIRSAQHFIYIENQYFLGSSFCWPSYKNAGADNLVP MEIALKIASKINANERFSAYVVIPMWPEGSPTSAAVQEILFWQGQTMMMMYKIIANALEKAGLLEAYHPQDYLNFFCLGKREDKIQDSSNLNPQTDNRAL AASQKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPAYTWSAKQSHPRSQIYGYRMSLWAEHMGELEEEYREPQSIKCMKSVNK IAKSNWKAFVAEEMMPMKGHLMQYPIQVSRDGRVTALPGHESFPDVGGKVLGSPTNLPDSLTT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10001293 [exp]	0	1
					Lus10033897 [exp]	4.1	0.9083
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	6.7	0.8815
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	7.5	0.9057
					Lus10003493 [exp]	12.4	0.8611
AT4G20820			FAD-binding Berberine family p...		Lus10038436 [exp]	13.6	0.8763
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	14.8	0.8182
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	18.0	0.8622
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	19.6	0.8254
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	20.1	0.8661
AT1G09794			Cox19 family protein (CHCH mot...		Lus10019951 [exp]	20.6	0.7586

Compare expression of checked genes

Lus10001293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.