Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06599 530 / 0 ubiquitin family protein (.1) AT5G45700 42 / 0.0004 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012700 [exp] 580 / 0 AT4G06599 551 / 0.0 ubiquitin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219300 [exp] 539 / 0 AT4G06599 542 / 0.0 ubiquitin family protein (.1) Potri.003G011300 [exp] 512 / 0 AT4G06599 503 / 1e-180 ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10001294 pacid=23165452 polypeptide=Lus10001294 locus=Lus10001294.g ID=Lus10001294.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGTCGTCCTCGGCGTCGGCGATGGTAGAGGAAATGACTCTGTCAGTGAAGTGGAGCGGCAAGGAGTACACCGTCCGAGTGTGCGGAGACG ATTCGGTGGCTGAATTGAAGCGACGGATTTGCGAAGCCACTAATGTACTCCCCAAACGACAGAAGCTCTTGTACCCTAAAGTCGGCAACAAGCTCGCCGA CGAATCTCTTCTCCTCTCCCAGCTTCCGCTCAAGTCCTCGCTCAAGATGACGATGATCGGAACTGTGGAGGATGACATAATTGTGGACCAAATGGATGAT CCGGAGATCGTCGATGACTTTCAGCTTGGACAAGATGAAGCCATTGATATCAAGGACAAGGAAGTTAATAAGCAGAAGTTGAAGAGACGCGTGGATCAAT ACAAGATCAAGCCTCGCAACCCATGCCGTGAAGGAAAGAAGTTGCTTGTGCTGGATATTGACTACACCCTTTTCGATCACCGGTCAACAGCGGAGAACCC TCTGGAACTAATGCGTCCATATCTCCATGAATTCCTTACAGCCGCTTATGCAGAATATGATATAATGATATGGTCTGCAACCAGCATGAAGTGGGTTGAA TTGAAGATGGGAGAGCTTGGAGTGCTAAGCAATCCCAATTACAAAATCACCGCTCTCCTGGACCATTTAGGTATGATCACTGTACAATCAGATGCCCGTG GGATCTTCGACTGCAAGCCCCTTGGATTGATATGGGCTCATTTCCCCGAGTTTTACAGTCCGAAGAACACCATAATGTTTGATGATTTGAGACGGAACTT CGTGATGAACCCTCAAAACGGCTTAACAATCAAGCCCTTCAGGAAGGCTCATGCAAACCGTGATAGCGATCAGGAGCTTCGGAAGCTAACTGAGTACCTT CTTGCCATAGCGGAGCTAGATGATATAAGCAGCCTGGATCACTCTCAATGGAAGTATTATGCAGAGGACGGCTCGAAAAGACGTAGACAAGCATAA
AA sequence Show only first row Show all	>Lus10001294 pacid=23165452 polypeptide=Lus10001294 locus=Lus10001294.g ID=Lus10001294.BGIv1.0 annot-version=v1.0 MAAESSSASAMVEEMTLSVKWSGKEYTVRVCGDDSVAELKRRICEATNVLPKRQKLLYPKVGNKLADESLLLSQLPLKSSLKMTMIGTVEDDIIVDQMDD PEIVDDFQLGQDEAIDIKDKEVNKQKLKRRVDQYKIKPRNPCREGKKLLVLDIDYTLFDHRSTAENPLELMRPYLHEFLTAAYAEYDIMIWSATSMKWVE LKMGELGVLSNPNYKITALLDHLGMITVQSDARGIFDCKPLGLIWAHFPEFYSPKNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDSDQELRKLTEYL LAIAELDDISSLDHSQWKYYAEDGSKRRRQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06599			ubiquitin family protein (.1)		Lus10001294 [exp]	0	1
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10011862 [exp]	4.8	0.8774
AT2G39870			unknown protein		Lus10004675 [exp]	5.7	0.8761
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	10.8	0.8627
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	11.5	0.8742
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	13.9	0.8419
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	16.3	0.8559
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10013476 [exp]	16.5	0.8222
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	20.8	0.8214
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	26.3	0.8106
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	27.2	0.7867

Compare expression of checked genes

Lus10001294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.