Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 766 / 0 Protein kinase superfamily protein (.1) AT2G48010 350 / 6e-112 RKF3 receptor-like kinase in in flowers 3 (.1) AT4G01330 245 / 1e-73 Protein kinase superfamily protein (.1.2) AT1G01540 244 / 1e-73 Protein kinase superfamily protein (.1.2) AT1G70520 245 / 6e-72 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G34500 236 / 1e-70 Protein kinase superfamily protein (.1) AT1G07650 247 / 2e-70 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56145 247 / 2e-70 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 246 / 2e-70 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 246 / 3e-70 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012701 [exp] 1182 / 0 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10029711 [exp] 536 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 439 / 5e-149 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028549 [exp] 428 / 5e-146 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10028551 [exp] 430 / 4e-143 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10028552 [exp] 429 / 7e-143 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 428 / 3e-142 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10029714 [exp] 415 / 8e-138 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 367 / 2e-121 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133000 [exp] 829 / 0 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 827 / 0 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 825 / 0 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 589 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 393 / 3e-133 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 330 / 9e-104 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 327 / 2e-102 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 310 / 6e-97 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 307 / 9e-97 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.010G221400 [exp] 246 / 2e-75 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001295 pacid=23165459 polypeptide=Lus10001295 locus=Lus10001295.g ID=Lus10001295.BGIv1.0 annot-version=v1.0 ATGGATTCCGGCACTCTCCCTCTCCGTCTCGTAGCCTTCTCAATTAGCTTATTCGGCTTTCTCATATCATCATCATCGTCGTCATCATCATGCCCAATGA ATTTCGACTACGTCACCAGACTCCCATGGAACAGATCATCTTGCCAGAACCACCTCCTCCCGAGAAACAACGACAGCAGTAAAGACCCGTGTTGCAGAAC TCTCCTCTCCCTCTTCGGTATATCTCTAGCTCTCCACCTAAAGCAAACCTCCAATTTCCACCTCCCAGATCTCCCCACTTCCATCTCCTGCATTGAAAAT TTCAAATCCAAGCTTTCAAATCAAAACGACGACGTTTCCTACTGCTTCCACCCTCAAAACTACGTGATCTCCCCAAACATCTGCGCTCGAATCCAGTCAA CCAAGGATTGGGTTGCTGCAGTTGGTTCGTCAACTCCGCTCGACTCGGCTTGCAAAACGGACCTCACCCATCTCACAGCTTGCGATTCGTGCGTGGCAGC CGGGTTTCGGATTCAGTTAACGTTGGTCTCGATCGACGGTAACAAATCTCACGCTACTGATTGCTTCTACTTCGCAGTCCTTTACGCCGCCGGTGTAGTC AACGATTTCGGTCCCGATAGCTACGGCGCTGCGTCCTGTATTTTCGGTTTGGACTTGGTTGGTTCGATCGAAATGGGTAATTCGGCTCGTAAATCATCAG CTCTGGTTACTGGTTTAGCCAGCTCTGTTGCTGGTTTGATCGCCGTGTCTATGGCAGGGGGGTTCTGGTTCTGGTATGATAAGAAAAGGAAGAGGAGGCT AATTTGGAAAGAAGAACAGGGATTATCCAGGCCTCGATTGAGGCCGAATACCGGTTCGATTTGGTTCAAGATCGATGAGCTCGAGAAGGCAACTAATGGT TTCTCGGACAGCAACTTCATTGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGTGTTCTCTCTGATGGGACGAGTGTGGCTGTTAAGAGGGTCCTGGAGT CTGATTTTCAAGGTGATGCTGAGTTTCGGAACGAGATTGAGATCATCAGCAACTTGAAGCACCGGAATCTGGTCCCCCTTCGAGGCTGTTGCGTGATCGA TGGCCGCGGAAGGGAAGACGATGTCGATGCAGGCGAGAGTCAGAGGTACCTTGTGTATGATTACATGGAGAATGGCAACCTTGATGACCATTTGTTCCCG ACAGTCATGGCGGACCTAGAGGCAGCCTCTCCCAGGCCAGGGTCAAACCCTTCTCGAGGAAAAGAAGAAGTGGGGCCACTGAGTTGGCAACAGAGGAAGA ACATAATACTGGACGTGGCGAAAGGGCTAGCTTACTTGCATCACGGAGTGAAGCCAGCAATTTTCCACAGAGACATTAAGGGGACCAACATACTACTCGA CTCCGACATGAGAGCTAGAGTTGCCGATTTCGGGCTAGCGAAGCAGAGCCTCGAAGGTCAGTCTCATCTCACCACCAGAGTGGCGGGTACTCACGGCTAC TTAGCCCCCGAGTACGCCCTCTACGGGCAGTTAACGGAGAAGAGCGACGTCTACAGCTTTGGAGTCGTCGTGCTTGAGATAATGTGCGGTAGGAAGGCTC TTGACATGTCTTCCTCAGACGGGTTTCTAATCACGGACTGGGCTTGGTCCCGAGTAAAGGCCGGGAAACTCGATAAGGCGCTGGATCGGTCCTTGTTAAG TGGCGGTGAAGATTCGACGTCGAATCAGAAGGTGGCGATGGAGAGGTTTGTGCTGGTGGGGATTCTATGTGCTCATGTCATGGTTGCTTTGAGACCTACT ATATTAGATGCGTTGAAGATGCTGGAAGGTGACGTGGAAGTTCCGCCGTTGCCGGATCGGCCGCTGCCTCTTTCGCATCCTTCTTTCTCCTGTAGTGGTG ATGCCAGCCATGCTTTTAGCATCTCGCCGGCTCTCAGTGGGCCGCAGCTGTACAGCAATGATATGCTTAGGTAG
AA sequence Show only first row Show all	>Lus10001295 pacid=23165459 polypeptide=Lus10001295 locus=Lus10001295.g ID=Lus10001295.BGIv1.0 annot-version=v1.0 MDSGTLPLRLVAFSISLFGFLISSSSSSSSCPMNFDYVTRLPWNRSSCQNHLLPRNNDSSKDPCCRTLLSLFGISLALHLKQTSNFHLPDLPTSISCIEN FKSKLSNQNDDVSYCFHPQNYVISPNICARIQSTKDWVAAVGSSTPLDSACKTDLTHLTACDSCVAAGFRIQLTLVSIDGNKSHATDCFYFAVLYAAGVV NDFGPDSYGAASCIFGLDLVGSIEMGNSARKSSALVTGLASSVAGLIAVSMAGGFWFWYDKKRKRRLIWKEEQGLSRPRLRPNTGSIWFKIDELEKATNG FSDSNFIGRGGFGIVYKGVLSDGTSVAVKRVLESDFQGDAEFRNEIEIISNLKHRNLVPLRGCCVIDGRGREDDVDAGESQRYLVYDYMENGNLDDHLFP TVMADLEAASPRPGSNPSRGKEEVGPLSWQQRKNIILDVAKGLAYLHHGVKPAIFHRDIKGTNILLDSDMRARVADFGLAKQSLEGQSHLTTRVAGTHGY LAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDMSSSDGFLITDWAWSRVKAGKLDKALDRSLLSGGEDSTSNQKVAMERFVLVGILCAHVMVALRPT ILDALKMLEGDVEVPPLPDRPLPLSHPSFSCSGDASHAFSISPALSGPQLYSNDMLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	0	1
AT3G22750			Protein kinase superfamily pro...		Lus10042622 [exp]	1.4	0.8882
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	1.7	0.9135
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	4.9	0.8797
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10043277 [exp]	6.5	0.8875
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	6.6	0.8700
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	6.7	0.8576
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	7.5	0.8631
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	7.7	0.8840
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	8.8	0.8789
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	8.9	0.8771

Compare expression of checked genes

Lus10001295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.