Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012703 [exp] 311 / 2e-105 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10036793 [exp] 52 / 2e-07 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 49 / 2e-06 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10030430 [exp] 44 / 4e-05 AT5G19790 115 / 1e-29 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087800 [exp] 98 / 1e-23 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 56 / 6e-09 AT5G19790 80 / 5e-17 related to AP2 11 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001297 pacid=23165457 polypeptide=Lus10001297 locus=Lus10001297.g ID=Lus10001297.BGIv1.0 annot-version=v1.0 ATGATCAAGTTAGAGAGAAAGAGACTTGAAGAAGGAGAAGTACAAACAACAGTGGTAGCACCACCACCTCCACCAACAGCCACTACCAACTTCACAGATT TCTTCCCGGACTCATTATTACTACCACCAAGCATTGATCAAAAGGAAGACGATTACAATTGTTTCGGGACCGGCGATCTGCAAGCTGGATCAGCAGAATT CAATTTAGGAACAACCTGTGATTTCAACAGCCAACATTCCTCTGACTCTCGAGAAATCGGAGGGGTCGACGACAATGGCGGTCTAATAAACTTCGATTTC GTGGACGATCTTCGAATTACAACGCTGAATTCATCGGCAGAATACTACTCCCCGTTTCAGATGGCTGATCATCAGGAGATTGACCAGGAAGAGTGCTACA GCTCCGAAATCAAGAGGATGAAATACGAAAGGAAGTTCTCTGCCTCTCTGTATGCGTTCCATGGGATTCCAGAGTGCTTGAAGCTTAAAGTTGACCAAGC TGCTGGAGATCAGTTGACCAAGCTGCAGAGTGCTTGCAGAAGAAGGAACCAGAGGGGGATGTCAATGGAGGAGGAAGAAGAAGGCAGAGAGAGATTTGCT ACTACTTCTACTACTACGAAGACTGAAGAATCGTCATCAATGGTGGTTGATCAAATGGTTTCATCTTCCTCTGCTGCAAATGATGGGGAGTCGACCCTGT GGAGCTCCCTTGATCTTCCATCAATCTGCTTCGTCCAATGA
AA sequence Show only first row Show all	>Lus10001297 pacid=23165457 polypeptide=Lus10001297 locus=Lus10001297.g ID=Lus10001297.BGIv1.0 annot-version=v1.0 MIKLERKRLEEGEVQTTVVAPPPPPTATTNFTDFFPDSLLLPPSIDQKEDDYNCFGTGDLQAGSAEFNLGTTCDFNSQHSSDSREIGGVDDNGGLINFDF VDDLRITTLNSSAEYYSPFQMADHQEIDQEECYSSEIKRMKYERKFSASLYAFHGIPECLKLKVDQAAGDQLTKLQSACRRRNQRGMSMEEEEEGRERFA TTSTTTKTEESSSMVVDQMVSSSSAANDGESTLWSSLDLPSICFVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001297 [exp]	0	1
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	8.1	0.7762
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	9.6	0.7695
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	22.4	0.7548
AT1G49170			Protein of unknown function (D...		Lus10020853 [exp]	24.4	0.7254
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	26.2	0.7658
AT1G23220			Dynein light chain type 1 fami...		Lus10031734 [exp]	26.3	0.7364
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	28.2	0.7527
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019829 [exp]	28.8	0.7460
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	31.0	0.7497
AT2G26470			unknown protein		Lus10038230 [exp]	32.7	0.7344

Compare expression of checked genes

Lus10001297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.