Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012704 [exp] 235 / 1e-79 AT2G14095 54 / 5e-09 unknown protein Lus10001300 [exp] 107 / 2e-28 AT2G14095 52 / 7e-08 unknown protein Lus10026715 [exp] 88 / 2e-21 ND / Lus10025501 [exp] 66 / 2e-13 ND / Lus10025500 [exp] 57 / 9e-10 AT2G14095 64 / 7e-12 unknown protein Lus10026713 [exp] 44 / 9e-06 ND 37 / 8e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101600 [exp] 75 / 2e-16 ND / Potri.002G101500 [exp] 69 / 2e-14 AT2G14095 55 / 5e-09 unknown protein Potri.017G050000 [exp] 57 / 5e-10 AT2G14095 105 / 6e-28 unknown protein Potri.001G310100 [exp] 39 / 0.0009 AT2G14095 109 / 1e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001299 pacid=23165450 polypeptide=Lus10001299 locus=Lus10001299.g ID=Lus10001299.BGIv1.0 annot-version=v1.0 ATGTTAGCCGCCGCCACAACGGCTGCCGCTTCCGTTGACTCATCGACTCGTCCGGAAGTCAAACTTCCGCATCGGAATCCGCGCATCACCAGCAGGAGCA ACTTCTCCTCCACATGTTTCAGATTCCTCCGACGTTCTCAACAACGACCGATGAAAATGATCGTCAGCGTTCGTAGCTCGGTAGTGCCTGGAGGAGTTTC TCTTCCTCCGCCGCCGCCGCCGTCGTCCGGTGGTGCTAATTCGCTTCCTTCTTGGAAAAAGTGGGTAGTGGGTGTTGTGCTATCGATTCTGCTGCCATCT TGCCGTTACAAGGTGTGGTCGTTGTTCAAGGATCGAGTAGACACGGCGGTGGAGACGGTGGAGATGATAACGGACATCGTGGAAGACGTGGCGGAGCAAG TTGAGAAGTTAGCCGACGACATCGGAAATGGTTTGCCGGAAGGTAAACTGAAAGATGCCCTTGAACGATTAGAAGAAGCCGCCGATAGATTGGATCAGGG TGCTGAGCTCGTCGGAGATGTCATTGATAAGGTAATTTCATACACGTTGCTTCATCCCAACTCGTTACATTTTGACTGA
AA sequence Show only first row Show all	>Lus10001299 pacid=23165450 polypeptide=Lus10001299 locus=Lus10001299.g ID=Lus10001299.BGIv1.0 annot-version=v1.0 MLAAATTAAASVDSSTRPEVKLPHRNPRITSRSNFSSTCFRFLRRSQQRPMKMIVSVRSSVVPGGVSLPPPPPPSSGGANSLPSWKKWVVGVVLSILLPS CRYKVWSLFKDRVDTAVETVEMITDIVEDVAEQVEKLADDIGNGLPEGKLKDALERLEEAADRLDQGAELVGDVIDKVISYTLLHPNSLHFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14095			unknown protein		Lus10001299 [exp]	0	1
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Lus10026863 [exp]	2.0	0.9520
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	4.0	0.9568
AT2G20080			unknown protein		Lus10034960 [exp]	6.3	0.9360
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	6.7	0.9475
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10018044 [exp]	9.1	0.9193
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	11.1	0.9470
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	11.2	0.9275
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	11.3	0.8929
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10037234 [exp]	16.2	0.9243
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	17.0	0.9425

Compare expression of checked genes

Lus10001299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.