Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012705 [exp] 100 / 3e-27 ND / Lus10012704 [exp] 75 / 2e-16 AT2G14095 54 / 5e-09 unknown protein Lus10001299 [exp] 71 / 9e-15 AT2G14095 53 / 2e-08 unknown protein Lus10026715 [exp] 67 / 6e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001300 pacid=23165454 polypeptide=Lus10001300 locus=Lus10001300.g ID=Lus10001300.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCCTTCACTGCTGCTGCACTACTCCATAGCTTACCAGTCATACCACGTCGTTTGATGAAGATGACTATCAATGCTTCTCTGTATCCTCCTC GTCATGTTAGCTGCATAAGAAGCAATGGTATTCTCTTCTCTACTAGCTGCAGGGGGTCCAAGACAAAGATGTATCTTAGGAATACGAGTGCTCATTGCAT TGGTGGCCTTCCGATCCCCAATTTCCCGTCTCTTCCTCCAAACCCTTCTCCCGGTTCGTGGAAACTATGGCTTGCGGGACTGGCAATTGCGCTAGTAGTA CCCTTATGGAGGAAACAACTGTTTTCCGACGTCAAAGAGAGATTTGATGACGTGGTGAATACGGTGGAGAAGGTAGCCGACGTTGTAGAGGACGTGGCGG AACAAGTTGAGAAGGTGGCCGACGAGATCGGCAACAAGTTGCCCGCCGGTGACTTAAAGGACGCATTTCAGTTCATTGAAGACGTCGCCGACAAGACCGA GCGGAGCGCTGAACTCGCCGGAGATGTCATCGATAAGGTACAAGAGTTGGAAGAAAAGGTGGACGCATACATTGAAACTACGAGTGGTAGTGATCATCTT TACGAAGAACACGCTAAGGCAAAGGAATTGAAAGTCAAGATTGAAGAAACCAAATCTAAGATTGACGATCAACTGGCAACCGCCGCCGCCAGCACGATGT CAGGAAAGGCGGTGGCTGAATCCACGGCGGTGGAAGAAACCAAATCTAACGTTTAA
AA sequence Show only first row Show all	>Lus10001300 pacid=23165454 polypeptide=Lus10001300 locus=Lus10001300.g ID=Lus10001300.BGIv1.0 annot-version=v1.0 MASSFTAAALLHSLPVIPRRLMKMTINASLYPPRHVSCIRSNGILFSTSCRGSKTKMYLRNTSAHCIGGLPIPNFPSLPPNPSPGSWKLWLAGLAIALVV PLWRKQLFSDVKERFDDVVNTVEKVADVVEDVAEQVEKVADEIGNKLPAGDLKDAFQFIEDVADKTERSAELAGDVIDKVQELEEKVDAYIETTSGSDHL YEEHAKAKELKVKIEETKSKIDDQLATAAASTMSGKAVAESTAVEETKSNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14095			unknown protein		Lus10001300 [exp]	0	1
AT2G47485			unknown protein		Lus10009156 [exp]	1.0	0.9789
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	3.7	0.9779
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	4.0	0.9755
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	4.7	0.9716
					Lus10020728 [exp]	4.7	0.9661
					Lus10027919 [exp]	5.7	0.9764
AT4G01575			serine protease inhibitor, Kaz...		Lus10010286 [exp]	7.9	0.9643
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	8.1	0.9702
AT5G57510			unknown protein		Lus10028472 [exp]	8.4	0.9717
					Lus10000527 [exp]	9.7	0.9743

Compare expression of checked genes

Lus10001300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.