Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16750 1108 / 0 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 97 / 2e-20 TAF5 TBP-associated factor 5 (.1) AT4G02730 89 / 6e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 88 / 1e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 89 / 5e-18 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 88 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 85 / 2e-17 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 83 / 5e-17 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G61210 86 / 6e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G62020 86 / 7e-17 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012706 [exp] 1577 / 0 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10024447 [exp] 99 / 7e-21 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 97 / 2e-20 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10033802 [exp] 96 / 6e-20 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 96 / 6e-20 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 91 / 1e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 87 / 2e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 87 / 3e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 89 / 8e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079600 [exp] 1201 / 0 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G047300 [exp] 768 / 0 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 95 / 7e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 94 / 2e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G121100 [exp] 93 / 4e-19 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 89 / 5e-19 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 88 / 1e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 84 / 4e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 85 / 5e-17 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.009G058000 [exp] 85 / 6e-17 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08625 [flax] [poplar] Utp13 Utp13 specific WD40 associated domain
Representative CDS sequence Show only first row Show all	>Lus10001301 pacid=23165453 polypeptide=Lus10001301 locus=Lus10001301.g ID=Lus10001301.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTGCAACCGAAGAAGAACTACCGCTGTGTGCCAACACTTCAGCAGGTCTATACTGGTGGCCCCCTTGTGGTGTCTTCTGATGGCACATTCA TCGCCTGTGCTTGTGGCGAATCCATCAAGATTGTTGATTCCGTTGATTTCTCAATTAAAGGGAGCATTGAGGAAGGGAACGACGAGGCTGTGACGGCCCT AACACTTAGCCCTAATGACAAGCTGCTTTTTTCTGCTGGCCACAGCAGGCAAATCAGGGTTTGGAACTTATCCACTTTGAAGTGTGAGCGGTCTTGGAAG GGCCATGATGGTCCAGTTATGACCATGGCTTGCCATGCTTCTGGTGGATTGCTAGCAACTGCAGGATCTGATAGGAAAGTTCTTGTATGGGATGTTGATG GCCATTTCTGTACTCATTACTTCAAAGGACATAAAGGGGTTGTCACTTGTATTATGTTCCATCCCGATCCTAATCAATCTCTTCTTTTTTCTGGAAGTGA CGATGCAACTGTACGAGTGTGGGATCTTCTTACGAAGAAGTGTGTAGCGACATTGGATAAACATTTCTCAACTGTGACATCTATGGCAGTATCTGAAGAT GGCCGGACATTGCTTACTGCTGGAAGAGATAAGGTTGTGAATGTGTGGGACCTAAATGATTTTACCTGCAAGACAACTGTACTTACGTATGAAGTGTTGG AAGCTTTATCTATAATTCGTTCCGGGGCGCTATTTTCTTCATTTCTGGGTGCACTCAATCAGCGTAATGGAAAAGGCACAAGTGATTCATCAGGAATCCA TTTTGTGACTGTTGGTGAACGTGGCATTGTACGCGTATGGAGTTCTGAACGTGCAACTTGTTTGTATGAGCATAAGTACTCTGATGTCGCAGTCACCTCA GACATTGATGATGATCAATCAAGAAGAGGCTTAACCGGTGTTGTTGTTCTTCCTAATGACCAAGGATTGCTTTCTGTTACGGCTGATCAGCAGTTTCTAT TCTACTCTCCGACTTCTGAAGGAGAGTTGGTGTTAAGCAAGAGATTAGTTGGGTACAATGAGGAAATACTGGACATGAAATTTTTAGGCGAAGAGGAAAA CTTCCTCGCTGTTGCTACCAATCTTGAACAGGTTCGAGTATATGACTTAGCATCTATGTCATGCTCCTATGTTTTGTCAGGTCACGCTGAGATTGTTTTA TGTCTTGATACTTGCACATTAAGTTGTGGGAAGGTACTTGTTGCAACTGGAAGCAAGGACAACACTGTGAGGTTGTGGGACACGGTAAGCCGGAAATGTG TTGGTATTGGCAAGGGTCACATGGGAGGCATTGGCGCTGTAGCATTTTCGAAGAAGGAGAAAAATTTCCTCGTTAGTGCCAGTAGTGATCTTACGATTAA GGTGTGGAGTTTCGACGGTATCTCATATGATGGTGACGAACCAACTAGTTTGAAAGCCAAAGCAGTGGTTGCTGCCCATGATAAAGATATAAATTCTTTG GCTGTTGCACCAAATGATCGTTTAGTGTGCACTGGTTCTCAGGACCGAACTGCTCGTGTGTGGAGGTTACCAGATCTGGTCTCAGTGGTGGAATTCAAAG GTCACAAACGAGGAATTTGGTCCGTTGAGTTTTCACCGGTCGATCCATGTGTCATAACAGCATCAGGCGATAAGACCATAAAGATATGGAGCATAGCTGA TGGTACCTGCAAAATGACATTTGAAGGGCACACATCTAGTGTGTTGAGAGCTTCATTTATTACTCGTGGCACCCAGTTTGTTTCCTCTGGAGCTGATGGG TTGGTCAAATTATGGACCGTTAGAACGAACGAATGCATCGCAACATACGATCAACACGAGGACAAGGTTTGGGCCCTGGCTATCGGGAAGAAGACTGAAA TGTTTGCAACTGGCGGTGGTGATGCAGTCGTTAATCTATGGTATGATTCAACCGCTTCTGACAAGGAGGAAGCATTCCGTGAAGAGGAGGAACGTGTACT GAAAGGCCAAACATTGGAGAATGCTATACTAGACAACGATTACTCAAAAGCCATTCAACTCGCTTTTGAACTCGACAGACCTCGCAAACTCTTCGAGTTG TTTTCTCAACTCTGCAGGAAGAGGGAAGCTGAGGGGATCAATCATATGAAGAAAGCCGTCTGCAGTCTCGGCAAGGACCAGTTGCGCTTACTTTTCGAGT ATGCCCGCGAATGGAACACGAAACCAAAGATGTGCCATATAGCACAGCTGGTTCTGTTTCAAGTGTTCAGCAACATCACTCCGTCAACCATCCTCGAGAT TAAAGGGATCAACGAGATACTGGAGGGGCTCATTCCGTATACGCAGAGGCACTTCACCAGGATAGATCGAGCTGTGAGGAGTACGTATTTGGTAGACTAT TCTCTGGTCGGAATGGGGGCCGTGGATGCGGATGTTGATGCGAAAGACAGTACAGATGAAGCGGTTCGTGACGATGGCGAGGCATTGGTGGAGACCGGCA CGTTGAAGAAGAGGAAATCGTCAACTAAATCTAGCAAGACTAAAAGTAAGAAGGTGAAGACAGCACCTCTGGAGGCTTAA
AA sequence Show only first row Show all	>Lus10001301 pacid=23165453 polypeptide=Lus10001301 locus=Lus10001301.g ID=Lus10001301.BGIv1.0 annot-version=v1.0 MSALQPKKNYRCVPTLQQVYTGGPLVVSSDGTFIACACGESIKIVDSVDFSIKGSIEEGNDEAVTALTLSPNDKLLFSAGHSRQIRVWNLSTLKCERSWK GHDGPVMTMACHASGGLLATAGSDRKVLVWDVDGHFCTHYFKGHKGVVTCIMFHPDPNQSLLFSGSDDATVRVWDLLTKKCVATLDKHFSTVTSMAVSED GRTLLTAGRDKVVNVWDLNDFTCKTTVLTYEVLEALSIIRSGALFSSFLGALNQRNGKGTSDSSGIHFVTVGERGIVRVWSSERATCLYEHKYSDVAVTS DIDDDQSRRGLTGVVVLPNDQGLLSVTADQQFLFYSPTSEGELVLSKRLVGYNEEILDMKFLGEEENFLAVATNLEQVRVYDLASMSCSYVLSGHAEIVL CLDTCTLSCGKVLVATGSKDNTVRLWDTVSRKCVGIGKGHMGGIGAVAFSKKEKNFLVSASSDLTIKVWSFDGISYDGDEPTSLKAKAVVAAHDKDINSL AVAPNDRLVCTGSQDRTARVWRLPDLVSVVEFKGHKRGIWSVEFSPVDPCVITASGDKTIKIWSIADGTCKMTFEGHTSSVLRASFITRGTQFVSSGADG LVKLWTVRTNECIATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEAFREEEERVLKGQTLENAILDNDYSKAIQLAFELDRPRKLFEL FSQLCRKREAEGINHMKKAVCSLGKDQLRLLFEYAREWNTKPKMCHIAQLVLFQVFSNITPSTILEIKGINEILEGLIPYTQRHFTRIDRAVRSTYLVDY SLVGMGAVDADVDAKDSTDEAVRDDGEALVETGTLKKRKSSTKSSKTKSKKVKTAPLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	0	1
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	2.8	0.9464
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	4.0	0.9480
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	4.5	0.9440
AT1G69070			unknown protein		Lus10036815 [exp]	8.8	0.9360
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	11.1	0.9463
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	11.2	0.9430
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	11.6	0.9432
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	12.0	0.9285
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	12.1	0.9407
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	12.3	0.9403

Compare expression of checked genes

Lus10001301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.