Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64610 748 / 0 HAM1 histone acetyltransferase of the MYST family 1 (.1) AT5G09740 740 / 0 C2H2ZnF HAM2 histone acetyltransferase of the MYST family 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012707 [exp] 877 / 0 AT5G64610 779 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089500 [exp] 780 / 0 AT5G64610 748 / 0.0 histone acetyltransferase of the MYST family 1 (.1) Potri.005G171700 [exp] 777 / 0 AT5G64610 751 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF01853 [flax] [poplar] MOZ_SAS MOZ/SAS family CL0049 [flax] [poplar] Tudor PF11717 [flax] [poplar] Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence Show only first row Show all	>Lus10001302 pacid=23165458 polypeptide=Lus10001302 locus=Lus10001302.g ID=Lus10001302.BGIv1.0 annot-version=v1.0 ATGGGTTCGATTGACACGCCACCACGTACAGATAACGCAGCGTCGGTGCCGACTTGCGCCGACGGCAACAATTCAATCGTCGAAGAGAATATACTCGAAG GGATGCCTTCCTTGGCAGAAACAACGGCTCGTCCGGAAACTGAGGCTTCGAGGAAGAGGAAATCTAGTCTCCTCCCGTTGGAGGTCGGTACTAGGGTTAT GTGCCGCTGGAGAGACGGCAAGTATCATCCCGTCAAAGTCATCGAGCGGCGGAAGGTTTCTTACTCCGATCCAAATGATTATGAGTACTACGTTCATTAC ACCGAGTTTAACAGGAGACTGGACGAGTGGGTGAAGCTTGAACAGCTTGATCTTGAATCTGTTGAAGCTGTTGTTGACGAGAAAGTAGAGGATAAGGTAA CCAGTTTGAAAATGACTCGGCATCAGAAAAGGAAGATTGATGAGACTCAAACGGAGGGACATGAGGAACTTGATGCTGCCAGCTTGAGGGAGCACGAGGA ATTTACAAAAGTGAAAAACATAGCTACGATAGAACTTGGAAGATATGAGATTGAGACGTGGTATTTTTCCCCCTTCCCACCGGAATACAATGACTGTTTG AAGCTGTACTTTTGTGAGTTTTGCCTGAATTTCATGAAGCGTAAGGAGCAGCTTCAAAGGCATATGAGGAAGTGTGATTTAAAGCATCCCCCTGGTGACG AGATATACAGAAGCGGTACATTATCAATGTTTGAGGTTGATGGTAAAAAGAACAAGGTCTATGGGCAAAATCTGTGCTACCTGGCAAAGCTGTTTCTTGA TCACAAAACTCTGTACTACGATGTTGACCTGTTTTTGTTTTATGTGCTGTGTGAATGTGATGATCGGGGTTGCCATATGGTTGGTTATTTTTCGAAGGAA AAACATTCCGAGGATTCCTACAATTTGGCTTGTATCCTCACACTTCCTCCTTACCAAAGGAAAGGCTATGGGAAATTTCTAATAGCTTTCTCGTATGAAC TCTCCAAGAAGGAAGGTAAGGTTGGGACACCTGAAAGGCCTCTTTCCGACCTAGGCCTGTTAAGCTATAGAGGATACTGGACCAGGGTTCTTCTAGACAT CTTGAAAAAGCACAAAGGCAACATCTCTATCAAGGAACTAAGCGACATGACTGCAATTAGAGCGGAAGACATACTGACGACTCTACAGAGCCTCGAGCTG ATCCAATACAGGAAAGGACAACACGTGATATGTGCCGACCCCAAAGTGTTGGATCGACACCTAAAAGCCGCTGGGCGCGGAGGTCTCGATGTTGATGTTA GCAAGTTGATCTGGACGCCGTATAAGGAACAGGGTTAG
AA sequence Show only first row Show all	>Lus10001302 pacid=23165458 polypeptide=Lus10001302 locus=Lus10001302.g ID=Lus10001302.BGIv1.0 annot-version=v1.0 MGSIDTPPRTDNAASVPTCADGNNSIVEENILEGMPSLAETTARPETEASRKRKSSLLPLEVGTRVMCRWRDGKYHPVKVIERRKVSYSDPNDYEYYVHY TEFNRRLDEWVKLEQLDLESVEAVVDEKVEDKVTSLKMTRHQKRKIDETQTEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCL KLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKE KHSEDSYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIRAEDILTTLQSLEL IQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64610		HAM1	histone acetyltransferase of t...		Lus10001302 [exp]	0	1
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	20.5	0.7506
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	37.2	0.7360
AT1G53200			unknown protein		Lus10030239 [exp]	49.9	0.7568
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	62.0	0.7386
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	85.1	0.7266
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10016066 [exp]	88.4	0.6949
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	123.3	0.7202
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	137.8	0.7051
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10001350 [exp]	145.1	0.7093
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	175.0	0.7067

Compare expression of checked genes

Lus10001302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.