Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65980 491 / 5e-174 Auxin efflux carrier family protein (.1) AT2G17500 476 / 4e-168 Auxin efflux carrier family protein (.1.2.3.4) AT1G76520 350 / 2e-118 Auxin efflux carrier family protein (.1.2) AT1G20925 349 / 2e-117 Auxin efflux carrier family protein (.1) AT1G76530 298 / 3e-98 Auxin efflux carrier family protein (.1) AT5G01990 218 / 1e-66 Auxin efflux carrier family protein (.1) AT1G71090 209 / 6e-63 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012708 [exp] 778 / 0 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 573 / 0 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 550 / 0 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025166 [exp] 354 / 8e-120 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 337 / 4e-113 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 303 / 1e-99 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10030715 [exp] 235 / 1e-73 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 198 / 5e-59 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 193 / 3e-55 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099300 [exp] 531 / 0 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.002G003500 [exp] 364 / 5e-124 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 362 / 6e-123 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 347 / 4e-117 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 334 / 3e-112 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 330 / 3e-110 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 310 / 9e-103 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.001G125501 [exp] 224 / 7e-69 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 206 / 4e-62 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 204 / 2e-61 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10001303 pacid=23165461 polypeptide=Lus10001303 locus=Lus10001303.g ID=Lus10001303.BGIv1.0 annot-version=v1.0 ATGGGTTTCTGGACTCTGCTTCAGGTGGCTTCAATGCCAGTTATTCAAGTCCTTATCATCGGTGTTCTGGGTGCAATCCTGGCCACTGATTACATCAACG TCCTCCATGCTGATGCTAGGAAATACTTGAACAAGGTTGTGTTCACGGTGTTCACACCGTCTCTTATGTTTGCGATCCTGTCGAAAACGGTCACATTCGG GGACATTGTATCCTGGTGGTTTATGCCGGTCAACATCGGACTGACCATGATATTCGGAGGGCTTCTAGGATGGGCTGTTGTGAAATTGGTGCGGCCAAGG CCACATCTTGAAGGTCTTCTGATTGCTACTTGTGCCACAGGAAACTATGGGAATCTGTTGCTGATAGTAGTGCCAGCAATCTGCAAAGAAGATGGCACCC CATTTGGGGATCATACCACTTGCAGCTCCATTGGCCTCTCATATGCTTCCTTCTCTGCTGCGCTGGGGAGTATCTATATCTGGACATGTGCGTACCAACT GGTGCGGAAATCAGCAATCAAATTCAAGGAACTCCAGAATGAGGAAGATGCTGCTGCTGCATCCAAACTACCAAACCCTGATCTTGAGGGAACTCAACTT CTCAAGGGAGATCATGAAGAAACACTGCCAGTAGTTGAGATTGGAGAAGCCAACAAGCCAATGGGAATTGTTGGAGTGCTGCACCAGATACTTCATGAGC TCACTGCTCCACCCACACTTTCCTCAATACTTGGTTTTGTGTTCGGAGCTACACCGTTCCTCAGGAACTTGATCGTAGGTGAAGGTGCACCGTTGCGAGT GGTCCAGAACTCGATTGCGCTTCTTGGGGATGGGACAATACCTTCCATTACTCTTATACTAGGAGGGAACCTAACACAAGGTTTGCGGTCTTCGAGCATC AAACCACTGATGATCGTAGGAGTAGTATGCGTCCGATACGTGTTCCTCCCAGTAATCGGGATATGTGTGATAAAAGCAGCAGCAAGTATAGGGCTGCTCC CTTCTGATCCACTGTTTGCCTATGTCCTGATGCTTCAATACAGCATCCCTCCAGCCATGAATATTGGTACAATGACACAACTGTTTGGTGTTGCTCAAGA AGAGTGCTCAGTTATCTTCTTGTGGACTTACTTGTTTGCTGCCGTAGCCCTCACTCTCTGGTCTACTGTCTATTTGTGGATGTTGTCCTGA
AA sequence Show only first row Show all	>Lus10001303 pacid=23165461 polypeptide=Lus10001303 locus=Lus10001303.g ID=Lus10001303.BGIv1.0 annot-version=v1.0 MGFWTLLQVASMPVIQVLIIGVLGAILATDYINVLHADARKYLNKVVFTVFTPSLMFAILSKTVTFGDIVSWWFMPVNIGLTMIFGGLLGWAVVKLVRPR PHLEGLLIATCATGNYGNLLLIVVPAICKEDGTPFGDHTTCSSIGLSYASFSAALGSIYIWTCAYQLVRKSAIKFKELQNEEDAAAASKLPNPDLEGTQL LKGDHEETLPVVEIGEANKPMGIVGVLHQILHELTAPPTLSSILGFVFGATPFLRNLIVGEGAPLRVVQNSIALLGDGTIPSITLILGGNLTQGLRSSSI KPLMIVGVVCVRYVFLPVIGICVIKAAASIGLLPSDPLFAYVLMLQYSIPPAMNIGTMTQLFGVAQEECSVIFLWTYLFAAVALTLWSTVYLWMLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	0	1
AT4G33925		SSN2	suppressor of sni1 2, unknown ...		Lus10019878 [exp]	1.4	0.9051
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	2.0	0.8864
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	2.2	0.8794
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001018 [exp]	3.5	0.8849
AT2G18570			UDP-Glycosyltransferase superf...		Lus10024037 [exp]	3.5	0.8458
					Lus10041677 [exp]	4.0	0.8820
AT5G20110			Dynein light chain type 1 fami...		Lus10030069 [exp]	5.3	0.8769
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	6.5	0.8777
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	8.3	0.8190
AT1G67550		URE	urease (.1)		Lus10036993 [exp]	8.9	0.8742

Compare expression of checked genes

Lus10001303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.