Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036312 [exp] 291 / 1e-89 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10008178 [exp] 194 / 9e-57 ND / Lus10020633 [exp] 130 / 5e-34 ND / Lus10042979 [exp] 136 / 2e-33 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10010883 [exp] 130 / 2e-33 ND / Lus10000293 [exp] 124 / 7e-30 ND 48 / 2e-05 Lus10042671 [exp] 119 / 8e-30 ND 41 / 0.001 Lus10010518 [exp] 110 / 7e-28 ND / Lus10027612 [exp] 113 / 5e-26 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001304 pacid=23144018 polypeptide=Lus10001304 locus=Lus10001304.g ID=Lus10001304.BGIv1.0 annot-version=v1.0 ATGGGTCGGATATGTTGCTATCCGTATCCGCCCATCACCCGAAATGCGCGGGTCACAGGCCTGGTCGAAATCGGTAACAACCCGCGGGCCATGGCTTCCG GGCTGCATTCACGGGATATTGGCGATCCCTCAAGACCTGCTAACGTCTACGGCTTTGGCACCCATTGGGTTGATGCCCAGGAAACCTCCATTCAGGGGGA GTCCCACAAAAACTTTGCTTCTGTCCTTCGGTCTCGAATCTCTGTTGGTTCGGTGTACAAACTCACAGGTTTTGGCCTCCGAACCCCTAGGCGGAACTTT CGCACAAGCTCCTCCCCTTATTGTCTTGATTTGACCCCAACGACTCAATTCCAACTCCAACCACCAACTACGCCTCCATTCCTTGCCCATTCGTTGCAGT ATATCGAGTTCGAAGCACTCTCTGGCCGTTTTCACCCGCCATTTTCATACCTCACAGACATTGTCGGTAAAGTTGTGGCTGGTGGTGAACTGGATCATTA CCAGCGGGGTTCATCTATTACTCAACTCCAGAAATTAACCTTTGTTAATGAAAGGGGTGTTGAGGTTGTTGTATCCCTTTGGGATAATCTTGCAGAAATC GTATATGCTGAAACGCTTCGGTTGAATGACGATCTCATTCTGTCAGATTCAACTGCCGGTGAACCATTTATTCTACTTGGCATGACGGCAGAAAGAATAC TACCCATATCTGCTGCTGAGTTAGTCCGTGCGCACCCCAATGATTATGACATATTCCCACCGGCGATTGAATTCTTGCTAGGGCAATCTGTTCGGTTTGA AGTACAGATGCCAAAATTTAGCCACTCATGCCCTTTCAGCGATATTCAAATTCATAACATCTCCAGATTAGTTATTCCTCGTCAAATGCTGGTTCCTCAG GAAGATAAGAAACCTTTGTCTTCGCGCAAGGCTAAGGGGACAACAACAGCGGCTAAGCAACCTCAATCTCCACAACCTGCATCTCCTTCATTATCCGAGG ATGACCAACCCCTCTCCAAAGTTTTTCTTACAAAACGGTCGCCTTCTACCTCCCACGCAAGCCAGCTGCCTTTGCCAGATCCTTATGCTATTGGATCTCC AGTTACCCCATCCTTTACTCCACCATCGCAGGAACAAGTTCTCGAGCGCGGGTGTTCCATCATGCAGGATGGCTCTGACTATATGAAAAAATCAACAGCT ATTTTGAGTGCCCTTCGTGCTCCGTCTCTGTTTGGGCTTGACGCATCCTCAACTGATAGTTCGTCCAAGTCAAATGCTTGGCGATGGGATGCAGCCACAG CTTGGTTGAGGCATGCGCAGCCAGACCAGAAAATGACTTTTCGACGAGTGAACCTCCCGATTCATCTTTACCCATTTGTGTCTTTTCCGCCCTATGTAGC TTGCGAGTGGTGCGGAAGGTGGTGCTTCGTTATTGGGATCTGGAAAAACTTGGGCCTCGATTGTTTGCTCTCAGGATCGGATCTGAAGTTTGTCGATGTT CTTGAGTCTGTTATTATTGATGGAGCTTTAATGTTTCCTAAATCTATTCTTGATCAAGGGGTTAAGCGGTTGCGTTCAGCAGTGGTGGCACAGTTTTTTG GTTCGGTGCCGCCAACTTGGGTTATCTCGTCGATGATCAACCAATTGTGGGGCTTTGAAGGGGAAGTTGTTCTCTCTAAGATATCAGTAGGTTTCATTCT TATTGAGTTTCCCTCGGTGAAGCTTTGTGACTGGGTTTTGAGCAGAGCCTGA
AA sequence Show only first row Show all	>Lus10001304 pacid=23144018 polypeptide=Lus10001304 locus=Lus10001304.g ID=Lus10001304.BGIv1.0 annot-version=v1.0 MGRICCYPYPPITRNARVTGLVEIGNNPRAMASGLHSRDIGDPSRPANVYGFGTHWVDAQETSIQGESHKNFASVLRSRISVGSVYKLTGFGLRTPRRNF RTSSSPYCLDLTPTTQFQLQPPTTPPFLAHSLQYIEFEALSGRFHPPFSYLTDIVGKVVAGGELDHYQRGSSITQLQKLTFVNERGVEVVVSLWDNLAEI VYAETLRLNDDLILSDSTAGEPFILLGMTAERILPISAAELVRAHPNDYDIFPPAIEFLLGQSVRFEVQMPKFSHSCPFSDIQIHNISRLVIPRQMLVPQ EDKKPLSSRKAKGTTTAAKQPQSPQPASPSLSEDDQPLSKVFLTKRSPSTSHASQLPLPDPYAIGSPVTPSFTPPSQEQVLERGCSIMQDGSDYMKKSTA ILSALRAPSLFGLDASSTDSSSKSNAWRWDAATAWLRHAQPDQKMTFRRVNLPIHLYPFVSFPPYVACEWCGRWCFVIGIWKNLGLDCLLSGSDLKFVDV LESVIIDGALMFPKSILDQGVKRLRSAVVAQFFGSVPPTWVISSMINQLWGFEGEVVLSKISVGFILIEFPSVKLCDWVLSRA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	0	1
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	2.0	0.8896
					Lus10009515 [exp]	2.4	0.8894
					Lus10043270 [exp]	3.5	0.8714
AT4G30310			FGGY family of carbohydrate ki...		Lus10006975 [exp]	6.2	0.8753
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	6.5	0.8520
AT1G01770			unknown protein		Lus10036349 [exp]	7.4	0.8539
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	8.7	0.8503
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	9.4	0.8347
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	11.0	0.8406
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	11.5	0.8437

Compare expression of checked genes

Lus10001304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.