Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44730 1209 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G47500 649 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 621 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 613 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT3G10310 536 / 2e-175 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 498 / 5e-159 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G73860 484 / 4e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 478 / 1e-152 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G18410 481 / 4e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 298 / 2e-85 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032897 [exp] 1942 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 627 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 622 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 576 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 518 / 3e-167 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10002007 [exp] 503 / 2e-160 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032264 [exp] 498 / 5e-158 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 496 / 6e-157 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10018049 [exp] 443 / 7e-139 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G467600 [exp] 1471 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 1459 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.013G011500 [exp] 677 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 672 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 659 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 655 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G104000 [exp] 530 / 6e-171 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 519 / 1e-166 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 486 / 2e-154 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 484 / 3e-154 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10001306 pacid=23144017 polypeptide=Lus10001306 locus=Lus10001306.g ID=Lus10001306.BGIv1.0 annot-version=v1.0 ATGGACGGCGGCGCTTCAGGTTCCTTCCCCAAGCAACCTTCAGAGGAAGACTTCTGCCTCTCTCTCCGAAACGGTCTCATCCTCTGCAACGTTCTCAACA AAGTCAATCCTGGCGCCGTCCCCAAGGTAGTCGAGAATCCTCTGATTGCCGTCCAGTCTCCCGAAGGACCTGCCCAATCCGCGATTCAGTATTTCGAGAA CATGAGGAACTTCCTTGTTGCGGTTAAGAAGATGGAGCTCTTGACTTTTGAAGCTTCTGATTTAGAGAAGGGAGGGTCCTCGAATAAGGTGGTGGACTGC ATTCTTTGTCTGAAAGGATATTACGAATGGAAGCAAGCTGGTGGAATTGGGGTATGGAGGTATGGTGGCCTTGTGAAGATCACTAACTTCCCCAGGGAAT CACCACCTTCATTGGTGGGCAGTGAAAGTGCGGACGAATCGTTTGATGAATCTGAATCTTCCCAGTATGATCAGCTGTTAGAATTTCTCCACCTTTCTCA TGAGATCTCAGATGAAGAATCAAGAACGGCCAATTTTCTTGCATTTCTTTTCGATCATTTCGGACTTCGACTGCTGCAAGCTTACCTTAGAGATTGTAAT GGGATTGATGACTTCCCTTTGAATGCAACGATCATAGATACCTTGCTCAGTAAGGTGGTCAAAGAATTCTCAGCGTTGCTTGTTTCGCAAAGCACGCAGG TTGGTCTCTTCTTGAAGAAAATATTGAAGCGGGATATTGGTTACCTCTCAAAAGAGGAATTTCTTGAAGCCATTTCACAGTATCTACGGCATAGAACTAA TTTGGTGTCTAGTGACCTCTCCAAGTTTTGTATCTGCGGAGGTAATAAAGAGCCTCTTGAACGCACCCCAACTATAAGTGATACGTCTTATCTTTCAGAG ACAACTGAACTTCACCAGAAAGAGCTTGAGGAGTTGAGATTCCATTACAAGCTGACTAGACAGGAAGTCGTGCAAATGCAAGCAGATTGGAGGGAGGAAC TAAGTCAGCTTGTACTTCACACCAAGACCCTTGAAGTTGCATCCTGTTCCTATCACAGTGTTCTGGAGGAAAATCGACAACTTTACAATCAAGTTCAGGA CCTTAAAGGTGCCATACGTGTGTACTGTCGGGTCAGGCCATTCTTACCAGGACATGCAAATGGGCAATCCACAGTAGATCACATTGGAGAAAATGGAAAT CTAATGATCGTCCATCCTCTCAAACAAGGCAAGCACGCCAGGAAGGTGTTCAACTTTAATAAAGTGTTTGGTACAAGCTGTACACAAGAGCAAATTTATG GTGACACTCAACCATTAATCCGATCGGTGCTGGATGGTTATAACGTTTGCATTTTTGCATATGGACAAACTGGGTCAGGGAAAACTTATACGATGAGTGG CCCTGATTTGAATACTGAAGAGACATGGGGTGTAAACTACCGAGCTCTTCGCACCCTATTTCAAATCTCAAAGACGAGGGCAGATATCCGTAACAATTCT CAACTGAATGGACTAAATGTACCCGATGCAAATTTGATTCGGGTGTCGAGCACTCAAGATGTTCTTGATCTAATGAGAATTGGTCAGAGAAATCGTGCAG TTGGTGCTACTGCTCTCAATGAGAGAAGTAGCCGTTCTCACAGCATTTTGACAGTTCATGTCTATGGAAAAGAGTTGATTTCTGGATCGATCCTGAAAGG TTGTCTGCATCTAGTAGATTTGGCTGGAAGTGAACGGGTGGTTAAATCTGAAGCTGTTGGTGAAAGGTTAAAAGAAGCTCAACATATCAATCGGTCTCTT TCAGCCCTCGGTGACGTTATCTATGCTTTGGCACAGAAGAGTCAACACGTACCCTATCGAAACAGCAAACTAACTCAAGTGCTACAAGATTCTCTAGGTG GCCAGGCAAAGACACTAATGTTTGTCCATATAAATCCTGAAGTTGATGCTATTGGCGAGACAATTAGCACTCTGAAGTTTGCAGAACGAGTTGCTTCTAT CGAACTAGGTGCAGCTAAAGCAAACAAAGAAACAGGAGAAATTCGAGATCTCAAAGAAGAGATATCAAGCTTGAAGCAAAATTTGGAGAGAAAGGAAGCG GAACTTGAACAACAGAAAACTGCAAATGGTAGAAGCACAGCAGAGGGACAAAGAACAAGAGCCGTTTCTCCTTTCTACATGCCAAGACAAGGCACAAACG CCAATGGTAAATCCGAAATAATTCAACGGGCAAACGATGAAAGCAAGGGCTTAGAGATTAGAAGTTGCTCTTCTGGCAAGCAAAGGAGGTCTAGATTTCC ATCTGCATTCCCCGATAAGGAAAAGCTTCTATTTAAACTGGGTGATGAGAGGCCTGGAAGCTCCATTAAGGCGAGATCACCATCTCCTCCTGTTAGGAGA TCAATCTCAACAGACAGAGGAGCCCAAATAAGGAACAGGACCAAACCAGAGACGATTGAGAATAGCCCAGTTGGAAGAATGCCTTTTCCTGCTAGAGTGC CTGTCAGCAAATCTATTGCATCAATACCTGCAATGCCATCAATAGAGAACAGGTCGAATGCAACACAAGAAGCGAAGCAGGATAATATAGCGAGTGCATT CTATAACTTCCAAAAGAATATTACTTCGAGGAAAGCATTCCCCGAATCTGAAGAAGAGCAATTCAAACAGGCTCTAAATATAAGGCAAGGAGGTATCAGG AAGGCCAAAAATAATGAGATGAAGTTAAAATCAAAGCAGCAGCAGCTGCCTGCAAAGCTGTCAAAGCCTGAAGTTGGTATGATGATGCTGTCCGCAATCG ACACGGGTGGTAAGCAAGAGGAGCCCCGTAGAAGTGACTTCTCAGAGACCGAAAACGAGGGAATGCTATCTGGCTCCCCATTTCTTGGTGGGTTTAATGT GAAGAAGCTTCAAAGGAACTTGTCCAGGAACTCTCAGAATCTTGAAGCAAGAGTTATCCAAGCTGCAGAGCCATTATGGGGTGGGAAAATAGCAAGCAGC GGAGCTAGGAATGTGAAGGAAGTTGGGAATGTTGGAAATCCACCAAGTGTGATGCCTGAGTTGAGAAGGAGTCAATCTACTCCTCGCGGGAAGTTCTTCA ATTGGCCTTGA
AA sequence Show only first row Show all	>Lus10001306 pacid=23144017 polypeptide=Lus10001306 locus=Lus10001306.g ID=Lus10001306.BGIv1.0 annot-version=v1.0 MDGGASGSFPKQPSEEDFCLSLRNGLILCNVLNKVNPGAVPKVVENPLIAVQSPEGPAQSAIQYFENMRNFLVAVKKMELLTFEASDLEKGGSSNKVVDC ILCLKGYYEWKQAGGIGVWRYGGLVKITNFPRESPPSLVGSESADESFDESESSQYDQLLEFLHLSHEISDEESRTANFLAFLFDHFGLRLLQAYLRDCN GIDDFPLNATIIDTLLSKVVKEFSALLVSQSTQVGLFLKKILKRDIGYLSKEEFLEAISQYLRHRTNLVSSDLSKFCICGGNKEPLERTPTISDTSYLSE TTELHQKELEELRFHYKLTRQEVVQMQADWREELSQLVLHTKTLEVASCSYHSVLEENRQLYNQVQDLKGAIRVYCRVRPFLPGHANGQSTVDHIGENGN LMIVHPLKQGKHARKVFNFNKVFGTSCTQEQIYGDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDLNTEETWGVNYRALRTLFQISKTRADIRNNS QLNGLNVPDANLIRVSSTQDVLDLMRIGQRNRAVGATALNERSSRSHSILTVHVYGKELISGSILKGCLHLVDLAGSERVVKSEAVGERLKEAQHINRSL SALGDVIYALAQKSQHVPYRNSKLTQVLQDSLGGQAKTLMFVHINPEVDAIGETISTLKFAERVASIELGAAKANKETGEIRDLKEEISSLKQNLERKEA ELEQQKTANGRSTAEGQRTRAVSPFYMPRQGTNANGKSEIIQRANDESKGLEIRSCSSGKQRRSRFPSAFPDKEKLLFKLGDERPGSSIKARSPSPPVRR SISTDRGAQIRNRTKPETIENSPVGRMPFPARVPVSKSIASIPAMPSIENRSNATQEAKQDNIASAFYNFQKNITSRKAFPESEEEQFKQALNIRQGGIR KAKNNEMKLKSKQQQLPAKLSKPEVGMMMLSAIDTGGKQEEPRRSDFSETENEGMLSGSPFLGGFNVKKLQRNLSRNSQNLEARVIQAAEPLWGGKIASS GARNVKEVGNVGNPPSVMPELRRSQSTPRGKFFNWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	0	1
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	1.0	0.9081
AT5G17910			unknown protein		Lus10020367 [exp]	3.9	0.8971
AT3G54030			Protein kinase protein with te...		Lus10017198 [exp]	6.2	0.8621
AT4G39420			unknown protein		Lus10006813 [exp]	6.5	0.8903
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	6.9	0.8888
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	7.3	0.8996
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	7.9	0.8842
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	8.0	0.8963
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	8.7	0.8955
AT1G65440		GTB1	global transcription factor gr...		Lus10029079 [exp]	9.1	0.8240

Compare expression of checked genes

Lus10001306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.