Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022965 [exp] 133 / 2e-36 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033281 [exp] 130 / 4e-35 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10027142 [exp] 119 / 6e-33 ND / Lus10004531 [exp] 108 / 5e-27 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10033279 [exp] 102 / 1e-24 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10007204 [exp] 96 / 3e-22 ND 43 / 2e-04 Lus10008240 [exp] 84 / 2e-18 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10010074 [exp] 77 / 2e-15 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10008200 [exp] 67 / 4e-13 ND 43 / 6e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G029200 [exp] 53 / 5e-08 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028700 [exp] 52 / 2e-07 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 51 / 3e-07 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G028300 [exp] 48 / 3e-06 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001309 pacid=23144020 polypeptide=Lus10001309 locus=Lus10001309.g ID=Lus10001309.BGIv1.0 annot-version=v1.0 ATGGCGGAACAACAACAATCCGAAGGATTAGGGCTTCCGATTGGTGATGCGTTCTTGATCACCAAACTGAAGAAGTCAGGAAAAAGGTGCGCCTGTTCTG TGGGAACCAGCGGAGGTTCGTGGCATCAAAATGATAACGGTTTGAAATTGAAGTTTCGATGCGGTGATGATTCTCGGGAACTGGATGCTTTTCGTAAGAA CTTTGACTATTGGAATCCCAACAATTCCACGAAACATAATTTATGGGGCTTGTCTGTGTATTCCATCAGCTTTGATGGTCGTACTACTTACTCGGATTTA GTCATTTGCAAGCTCAAGAACAAACATAAGTTGAGTGTTGAGGTTGAGGCACAACCATCCACTGCAAAGAAGAGGAACTTCCAAGGATGTGACGACAGTG GCTGCTCCTCGCTGCCATCTTTGAAAGTTGCGAAAATCTCCGATTGTCACAAGATAGTGCCAACAACTGATCTATCTCACCACACTGGGGAAGAACAGAA AGCAGGGTCAGAGGGTGATTTCTACATTGATTATAAGCTTACCTGTTTAATTCAGACATTCATCTATGAGGATGAAGCAGCTGGAAAGCTTGAGCAAGTT CAGTCCACTGTCAAACCAATTCTAGAGGTTCCTCCTCCTCTTAATCTTATATCATTTCCCCCTCAGGTATCTTTGATCGATGATGATTTCATTAACAGGT TACCTTTGATTGACGACGATTTCTTTTACTGCATTTCTAGTCCCAATTACATTCCTTGCTCATTTTCTTCAGATTTGGATCATGGAAGTGGTGGTTTTTT TGACTCTGTTGATCCATTCTCTTATTTGCATGATCCAGGGCTCTAA
AA sequence Show only first row Show all	>Lus10001309 pacid=23144020 polypeptide=Lus10001309 locus=Lus10001309.g ID=Lus10001309.BGIv1.0 annot-version=v1.0 MAEQQQSEGLGLPIGDAFLITKLKKSGKRCACSVGTSGGSWHQNDNGLKLKFRCGDDSRELDAFRKNFDYWNPNNSTKHNLWGLSVYSISFDGRTTYSDL VICKLKNKHKLSVEVEAQPSTAKKRNFQGCDDSGCSSLPSLKVAKISDCHKIVPTTDLSHHTGEEQKAGSEGDFYIDYKLTCLIQTFIYEDEAAGKLEQV QSTVKPILEVPPPLNLISFPPQVSLIDDDFINRLPLIDDDFFYCISSPNYIPCSFSSDLDHGSGGFFDSVDPFSYLHDPGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001309 [exp]	0	1
AT1G03000		PEX6	peroxin 6 (.1)		Lus10040918 [exp]	1.4	0.9155
					Lus10000409 [exp]	2.2	0.9005
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	2.8	0.9164
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	5.2	0.8677
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	5.7	0.9067
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013094 [exp]	6.3	0.8843
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	8.7	0.8563
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	8.8	0.8958
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	12.2	0.8576
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	12.5	0.8764

Compare expression of checked genes

Lus10001309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.