Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30020 1122 / 0 PA-domain containing subtilase family protein (.1) AT2G19170 1113 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT5G44530 498 / 1e-164 Subtilase family protein (.1) AT1G30600 494 / 2e-163 Subtilase family protein (.1) AT4G20430 493 / 8e-163 Subtilase family protein (.1.2) AT1G62340 448 / 1e-145 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 242 / 5e-69 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 236 / 9e-67 ARA12 Subtilase family protein (.1) AT3G14067 227 / 1e-63 Subtilase family protein (.1) AT3G14240 226 / 3e-63 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006973 [exp] 1409 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 511 / 2e-169 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 507 / 4e-168 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10000960 [exp] 484 / 2e-159 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 479 / 1e-157 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001006 [exp] 472 / 1e-155 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10008060 [exp] 466 / 5e-152 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10015559 [exp] 419 / 1e-134 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 365 / 1e-115 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G076200 [exp] 1190 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 1182 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G440300 [exp] 519 / 8e-173 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.001G151100 [exp] 513 / 8e-171 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G155400 [exp] 508 / 1e-168 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.011G010700 [exp] 280 / 2e-85 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.009G100500 [exp] 244 / 2e-69 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.007G045100 [exp] 242 / 5e-69 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G018900 [exp] 239 / 6e-68 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 239 / 6e-68 AT5G51750 1102 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0159 [flax] [poplar] E-set PF06280 [flax] [poplar] fn3_5 Fn3-like domain CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10001310 pacid=23169295 polypeptide=Lus10001310 locus=Lus10001310.g ID=Lus10001310.BGIv1.0 annot-version=v1.0 ATGAGGATGGTGTACATTTTGTGTACATTGCTAGCTGTTTTGTCACTCATCATTGATGGGGATGCTCATGTGTATATGGTGATGATGGAGGAAGAGCCGG TAGTAAGCTATAGAGGAGGCGTTCCCGGTTTCGAGGCAACTGCTTCCGAATCCGATGAAAAGATCGACACAACTCGCGAGGCAGTCACATCGTATGCGAC ACACCTCGAGAAGAAGCACGATATGCTTCTCGATATGCTGTTTGATCAAGGATCGTACGAGAAGCTTTATAGTTATCGGCATCTTATCAATGGTTTCTCA GTTCATATGGATCCTGAACAGGTAGAAACCTTAAGGCGCGCCCCCGGTGTGATATCGGTGGAACGAGATTGGAAAGTTCACCGGCTCACGACACACACGC CACAGTTCTTAGGCCTTCCTACCGGAGTTTGGCCGACCGGAGGTGGTTTCGACAGGGCCGGGGAGGACATTGTGATTGGATTCGTGGACTCGGGGATTTA TCCTCATCATCCTAGCTTTTCGACTCATCACACTGATCCGTATAGACCGCTTCCCAAGTACAAGGGAAAATGCGAGGTTGATCCTCAGACTAGGAGGGAG TTCTGCAACGGGAAGATTATCGGAGCTCAACATTTCGCTGCTGCTGCGAAAGCTGCTGGCGTCTTTAATCCTGCTATCGATTTCGCATCACCATTAGACG GTGATGGACATGGAAGTCACATTGCAGCTATTGCAGCCGGAAACAATGGCATCCCGGTGAGAATGCATGGCCATGAGTTCGGGAAAGCAAGCGGGATGGC TCCTCGTGCTAGAATTGCTGTGTACAAGGCTCTCTACCGGCTGTTCGGAGGCTTCATTGCTGATGTAGTGGCCGCCATCGATCAGGCTGTGTATGATGGA GTGGATATACTGAGCCTTTCTTTGGGGCCAAACAGTCCCCCGGCAACAACGAAGACGACATATCTAAACCCATTCGATGCCACACTATTGGCTGCTGTTA AAGCAGGAGTCTTCGTCGCTCAGGCAGCAGGAAACGGAGGTCCATTTCCGAAGACGATGGTCTCGTATAGCCCATGGATAACTTCTGTAGCTGCTGCAAT TGATGACAGGAGATACAAGAATCACTTAACTATGGGGAATGGGAAAATCTTACCCGGAGTTGGCTTATCACCATCTACACGCCTGAACAAGACATATACA TTGGTATTCGCGAACGATGTTCTCCTAGACTCTTCGGTGATGAAGTATAGTCCTTCGGATTGCCAGAGACCTGAATTGTTCAACAGGAAGTTGGTTGAAG GGAGGATCCTCCTCTGTGGCTATTCCTTCAGCTTTGTTGCTGGTACATCGTCTATTAAAAAGGTCTCCGAGACTGCCAAGAAGCTCGGTGCGGCTGGATT CGTTCTCGCCGTGGAGAGTAATACACCGGGAGCGAAATATGATCCCGTGCCTGTTTGTACACCCGGCATTGTCATCACGGATTCACTCAAATCGGCGGAT CTGATTGACTATTACAACATCTCAACACCAAGAGATTGGACTGGTAGAGTGAAGAGCTTCAATGCGGTCGGAAGCATTGGCGATGGCTTGATGCCTATAC TTCACAAATCTGCACCTCAGGTTGCTTTGTTTTCTGCTAGAGGACCCAACATCAAAGATTTCAGCTTTGGAGATGCTGACCTTCTGAAACCTGACATCTT GGCTCCTGGCTCTTTGATTTGGGCTGCCTGGTCACCAAATGGAACAGATGAAGCAAATTTCATGGCTATCAAGTCGGCCTTGATGACGACATCCAATGAG CTCGACAGAGCGGGAAGGCCTCTTCAGGCGCAGCAGTACTCCGATTCGGAAGTCATGAAGCTCGTTCGTGCCACCCCTTTCGATTATGGCTCCGGTCATG TCAACCCCAGGGCTGCTCTCGATCCTGGACTCGTCTTCGATGCAGGCTACGAGGATTACTTGGGGTTCTTATGCACAACCCCAGGAATAAACGCCCACGA GATAAGAAACTTCACAAACAAGCCATGCAACTACTCAATGGGCCACCCAACAAACTTCAACACCCCATCGATCACCGTGTCCCGTCTGGTCAGAACCCAG ACCGTTACTCGAACCGTAACCAATGTGGCTGACGAGGAGGAGACCTACGTGAACACCGCACGAATGGACCCAGCCATTGCCATCGAGGTCCACCCACCGG CCATGACACTCAAGCCCGGTGCGTCGAGGAAGGTGACGGTGAGTGTGACTGTTAGATCGGTGACCGGGGGGTACAGTTTCGGAAAGGTTACGATGAAAGG CAGCCGCGGGCACCAGGTTAGGATCCCAGTTGCTGCAATGGGGTACTGGCGATGA
AA sequence Show only first row Show all	>Lus10001310 pacid=23169295 polypeptide=Lus10001310 locus=Lus10001310.g ID=Lus10001310.BGIv1.0 annot-version=v1.0 MRMVYILCTLLAVLSLIIDGDAHVYMVMMEEEPVVSYRGGVPGFEATASESDEKIDTTREAVTSYATHLEKKHDMLLDMLFDQGSYEKLYSYRHLINGFS VHMDPEQVETLRRAPGVISVERDWKVHRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFSTHHTDPYRPLPKYKGKCEVDPQTRRE FCNGKIIGAQHFAAAAKAAGVFNPAIDFASPLDGDGHGSHIAAIAAGNNGIPVRMHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVYDG VDILSLSLGPNSPPATTKTTYLNPFDATLLAAVKAGVFVAQAAGNGGPFPKTMVSYSPWITSVAAAIDDRRYKNHLTMGNGKILPGVGLSPSTRLNKTYT LVFANDVLLDSSVMKYSPSDCQRPELFNRKLVEGRILLCGYSFSFVAGTSSIKKVSETAKKLGAAGFVLAVESNTPGAKYDPVPVCTPGIVITDSLKSAD LIDYYNISTPRDWTGRVKSFNAVGSIGDGLMPILHKSAPQVALFSARGPNIKDFSFGDADLLKPDILAPGSLIWAAWSPNGTDEANFMAIKSALMTTSNE LDRAGRPLQAQQYSDSEVMKLVRATPFDYGSGHVNPRAALDPGLVFDAGYEDYLGFLCTTPGINAHEIRNFTNKPCNYSMGHPTNFNTPSITVSRLVRTQ TVTRTVTNVADEEETYVNTARMDPAIAIEVHPPAMTLKPGASRKVTVSVTVRSVTGGYSFGKVTMKGSRGHQVRIPVAAMGYWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	0	1
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	2.6	0.8503
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	2.8	0.8632
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	3.0	0.8777
AT3G01810			unknown protein		Lus10022341 [exp]	3.2	0.8736
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	4.9	0.8635
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	6.7	0.8605
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	8.5	0.8471
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	8.8	0.8387
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10029321 [exp]	9.0	0.8082
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	11.2	0.8266

Compare expression of checked genes

Lus10001310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.