Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57370 119 / 4e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006974 [exp] 150 / 6e-46 AT5G57370 132 / 2e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091300 [exp] 115 / 7e-33 AT5G57370 103 / 3e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08648 [flax] [poplar] SNRNP27 U4/U6.U5 small nuclear ribonucleoproteins
Representative CDS sequence Show only first row Show all	>Lus10001311 pacid=23169304 polypeptide=Lus10001311 locus=Lus10001311.g ID=Lus10001311.BGIv1.0 annot-version=v1.0 ATGACCGCGCCGCGCCTCGCGCGGTCGCGAACTCGCTCGCCGGACCGAGCTCGAGCAAGGCACACTCGTTCCCGGACTCGCTCGCCAGACAGGCACCAAT CAAGGTCGCCGCCTTCCCACCGCCGCCACCATCACCAGCGCACGCCGTCGCCTTCGCCTCCGCGGAAGAGGCACCGTCACGAGACCGAGGAGGAACGCGA GAAGGACAGGCAAAGGTCTTCTGATTTTGTGGACGGGAACTCGAAGAGGAAGGAGATCTTTTTTGGCGGTGCAGGAGTGGCCGAGGGAGATGGAAACGGT GCTGAGATGAACCAGGACGAGATGGAGATGATGAAGATGTTAGGGATTCCAACTGGTTTCGACTCCACGAAAGGGAAACCAGTTGACGGCGCTGATGTCA GCGGCATCAGAGCAGTGAGTAAGCGTCAGCCTAGGCAGTATATGAATCGCCGGGGAGGGTTCAATCGGCCGTTGCCTGCAGAGCGTAACCGGTAG
AA sequence Show only first row Show all	>Lus10001311 pacid=23169304 polypeptide=Lus10001311 locus=Lus10001311.g ID=Lus10001311.BGIv1.0 annot-version=v1.0 MTAPRLARSRTRSPDRARARHTRSRTRSPDRHQSRSPPSHRRHHHQRTPSPSPPRKRHRHETEEEREKDRQRSSDFVDGNSKRKEIFFGGAGVAEGDGNG AEMNQDEMEMMKMLGIPTGFDSTKGKPVDGADVSGIRAVSKRQPRQYMNRRGGFNRPLPAERNR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57370			unknown protein		Lus10001311 [exp]	0	1
AT5G57370			unknown protein		Lus10006974 [exp]	2.0	0.9227
AT4G24730			Calcineurin-like metallo-phosp...		Lus10019465 [exp]	2.2	0.9216
AT2G41945			unknown protein		Lus10021080 [exp]	2.4	0.9316
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	5.0	0.9378
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	5.3	0.9366
AT3G12620			Protein phosphatase 2C family ...		Lus10001976 [exp]	6.9	0.9061
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	9.2	0.9134
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10037745 [exp]	13.1	0.8902
AT4G10790			UBX domain-containing protein ...		Lus10003214 [exp]	13.3	0.9076
AT1G03910			unknown protein		Lus10035558 [exp]	13.6	0.9196

Compare expression of checked genes

Lus10001311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.