Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30310 733 / 0 FGGY family of carbohydrate kinase (.1.2.3) AT1G80460 48 / 1e-05 GLI1, NHO1 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006975 [exp] 874 / 0 AT4G30310 927 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Lus10024516 [exp] 124 / 5e-34 AT4G30310 94 / 7e-24 FGGY family of carbohydrate kinase (.1.2.3) Lus10035914 [exp] 57 / 2e-08 AT1G80460 845 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095700 [exp] 774 / 0 AT4G30310 989 / 0.0 FGGY family of carbohydrate kinase (.1.2.3) Potri.003G030900 [exp] 45 / 9e-05 AT1G80460 833 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00370 [flax] [poplar] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [flax] [poplar] Actin_ATPase PF02782 [flax] [poplar] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10001312 pacid=23169299 polypeptide=Lus10001312 locus=Lus10001312.g ID=Lus10001312.BGIv1.0 annot-version=v1.0 ATGTCCTCCTCCGCCGTCACCTCCCCTCGCCGCTCCGGCAGCCTCTTTCTCGGCGTCGACGTCGGCACCTCCAGCGCCCGCGCCGAAGTGTTCGATGACA GAGGGAAGCTACTAGGCACGGCGAGTAGTCCTATCCAGATTTGGAAAGAAGGCGATATCGTTGAGTCGACGGATATTTGGCATGCAGTGTGTGCGTCGGT TAAGTCGGCTTGCTTTGTTGCTAAGGTTGCTGGCCATGAAGTGACCGGGATTGGATTCGCTGCTACTTGTTCTCTTGTTGCTGTTGATTCTGATGGTGCT CCGGTTACTGTATCGTGGAGTGGAGATTCAAGGAGGAATGTCATTGTGTGGATGGATCACAGAGCTGTTAAACAAGCTGAAAAGATCAATTCGTTTAAAT CTCCAGTACTGGAGTACTGTGGTGGAGCTGTCTCTCCTGAAATGCAGCCACCCAAGCTACTATGGGTGAAAGAAAATTTGCCAGAGTCGTGGTCGATGGT GTTCAGGTGGATGGACTTGAGTGATTGGCTGTCCTACAGAGCCACTGGAGATGATACTAGAAGTCTGTGCACAACAGTCTGCAAATGGACGTATCTTGGT CATGCACACGTGCAGCAGATGAATGAGAATAATTCTAGGGATATGGAAGCTTGTGGATGGGATGATGACTTTTGGGAAGAAATTGGCTTGGGCGATCTTT TGGAGGGTCATCATGCTAAGATTGAAAGGAGGTGCAGTATGCCTAGATCTGAAATAAGAAAATTTGCACAGGACGAAGTGTTGCTCTCCCGGGCCATTCT TTGGGGTCTGGAAATGGGTCTTACAGCAGGAATTCCAGTTGGGACGTCATTGATTGATGCCCATGCTGGTGGGGTAGGGATCATGGAAAGCATCCCCGGG TTGGATTCTGAGGCTAAAGCAATGCTGCCCGAGTATTGGCTTCCAGAAGGTGGACAGAGTGCTACTGGGGCATTACTGGATTACATAATTGAAAACCATG TCGCTTCTCCTCAGCTTGCAGATCGAGCTGCATCGCAAAAGACTTCTATCTTTGCGTTGTCTCCTATTGCAGACCCTAAATCGAAGGGAATCATTTGCGG CCTGACACTCGACACAAGTGAAAGACAGTTGGCTCTTCTCTACCTTGCCACTGTACAAGGAATTGCATATGGTACACGGCATATTATGGAGCACTGCAAC GCTCATGGCCACGAGATCAACACATTGCTGGCTTGTGGTAGTCTCTCCAAGAACTCCCTTTATATCCAAGAACATGCAGATATCATTGGTTGCCCCGTTG TTCTGCCTCGTGAAAGTGAATCCGTGCTCTTGGGAGCTGCAATCCTTGGTGCAGTTGCTGCAAAGAAATATGCCACCCTCATGGAAGCCATGAAAGCTCT GAACGCAGCTGGCCAGGTCGTTCGGCCATCGCAAGACTCAAAGGTGAAGAAGTTCCACGACGCCAAGTACAAGATCTTCCGGGAGCTTTACGAGCAGCAG CTGTCTCAACATTCAGCCATGGCCAAAGCCTTGGATAGTAAAGGTTGA
AA sequence Show only first row Show all	>Lus10001312 pacid=23169299 polypeptide=Lus10001312 locus=Lus10001312.g ID=Lus10001312.BGIv1.0 annot-version=v1.0 MSSSAVTSPRRSGSLFLGVDVGTSSARAEVFDDRGKLLGTASSPIQIWKEGDIVESTDIWHAVCASVKSACFVAKVAGHEVTGIGFAATCSLVAVDSDGA PVTVSWSGDSRRNVIVWMDHRAVKQAEKINSFKSPVLEYCGGAVSPEMQPPKLLWVKENLPESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLG HAHVQQMNENNSRDMEACGWDDDFWEEIGLGDLLEGHHAKIERRCSMPRSEIRKFAQDEVLLSRAILWGLEMGLTAGIPVGTSLIDAHAGGVGIMESIPG LDSEAKAMLPEYWLPEGGQSATGALLDYIIENHVASPQLADRAASQKTSIFALSPIADPKSKGIICGLTLDTSERQLALLYLATVQGIAYGTRHIMEHCN AHGHEINTLLACGSLSKNSLYIQEHADIIGCPVVLPRESESVLLGAAILGAVAAKKYATLMEAMKALNAAGQVVRPSQDSKVKKFHDAKYKIFRELYEQQ LSQHSAMAKALDSKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	0	1
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	3.3	0.8792
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10006383 [exp]	4.5	0.8608
AT1G02100		SBI1	SUPPRESSOR OF BRI1, Leucine ca...		Lus10028206 [exp]	10.9	0.8563
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	11.4	0.8760
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10009335 [exp]	12.1	0.8071
AT1G72510			Protein of unknown function (D...		Lus10037683 [exp]	12.4	0.8529
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10041720 [exp]	13.1	0.8328
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	13.4	0.8471
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10015229 [exp]	14.3	0.8579
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	18.8	0.8757

Compare expression of checked genes

Lus10001312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.