Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57610 385 / 1e-122 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 147 / 4e-37 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 134 / 8e-33 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT2G35050 132 / 3e-32 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 132 / 3e-32 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 112 / 1e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G04700 115 / 8e-27 PB1 domain-containing protein tyrosine kinase (.1) AT4G05150 113 / 1e-26 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 103 / 3e-25 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT5G64430 103 / 2e-23 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006977 [exp] 768 / 0 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 152 / 9e-39 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 151 / 1e-38 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 138 / 5e-36 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 140 / 8e-35 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 126 / 4e-31 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 117 / 5e-28 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035772 [exp] 111 / 2e-26 AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 106 / 4e-26 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170700 [exp] 498 / 3e-165 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 475 / 1e-156 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 147 / 3e-37 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 144 / 5e-36 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 129 / 2e-31 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 127 / 1e-30 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.004G032200 [exp] 123 / 3e-30 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 125 / 6e-30 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 125 / 6e-30 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.007G069500 [exp] 124 / 1e-29 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10001314 pacid=23169294 polypeptide=Lus10001314 locus=Lus10001314.g ID=Lus10001314.BGIv1.0 annot-version=v1.0 ATGGATACGCCAACTTCTGCAACTAATTCCAACCCTAGTACTACTGACTTCCGCAGCGATGAAGCTCCGCGGGTCAAGTTTTTGTGTAGCTTCTTAGGTA ACATAATGCCTCGTCCGCAAGATGGGAAATTGCGGTACGTGGGAGGGGAGACAAGGATTGTGAGTTTGTCTAGGGACATTGGGTATGAGGAGCTGATGAG TAAGATGAGGGAGCTTTACGGTGGCGCGGCTGTGTTGAAGTATCAACAGCCGGATGAGGATCTAGATGCGTTGGTTTCGGTTGTGAATGATGATGATGTG ACGAATATGATGGAGGAGTATGAAAAATTGGGATCTGGAGATGGGTTCACGAGGCTTAGGATATTCTTGTTTTCGCAGTCGGAGCAAGATGGGTCGCCGC ATTTTGTTGACGGTGGGGATGATAGGGAGACTGAGAGGAGGTATGTTGATGCGCTGAACAATTTGAATGAGGGGAGAGTGCAGATCGATTCGCCGACTTT GATGGGAGGAGTTGATGATGTGCATTTACAGGAACAGTTTTTTGGTCGTATGAGTCTTGATGGTGGTGTTGGTGGTGGGATTCATGGTCTGAGGAGTCAT GATACACCATTACCGCAGTATAATTTGCGGCATGTTGCTGTTCCTCAGAGATACAGTGAGATGGAAGGTCCATGGAGCCCTGCTGCATATTATTCTCCTA GGCATCATGGTGGGCATCCTGACGCGAGATCGTTGTTGGAGTTTCCGAATTCTCCTCCTTCTGCTCGTTATCGTATGCCCTTCGGGGAAGTGGGTCCGGA GACTGTGGCGTGGATGCACGGTGGAGGTGTATCCGGTGATAAAGCTGGTTTTCCAGGTAATTTGCTGCATGGTCAAGGTGTTATGGAAGGTAATAGCTCC GCTTGTGATAACTGTCACGCCCCTTTTCAAAGAAGCCAGGTGGGTTTCGACCAGACTAATATGGGAAACGGTCTCCCCCATGCTGTTAATTCTTGTAATG AGTGCGCGCCGAATCGGGAGGCTTTCATGGGACATCCAGATCCAAATGTGCACCATCCAGATCCCCGGAATGCCTATAATGAGTCTCGTGGACATGAAAG GGGATGGGTTTTGCAGCATCAAGCGAGCCCTCGAACTGATGAGGCTAGATCGCATCTCTCCGGTGCTGGAAGGTTCAACGAACATTACATCGTTGATGGT CTGTGGCGTGGATGCACGGTGGAGGTGTATCCGGTGATAAAGCTGGTTTTCCAGGTAATTTGCTGCATGGTCAAGGTGTTATGGAAGGTAATAGCTCCGC TTGTGATAACTGTCACGCCCCTTTTCAAAGAAGCCAGGTGGGTTTCGACCAGACTAATATGGGAAACGGTCTCCCCCATGCTGTTAATTCTTGTAATGAG TGCGCGCCGAATCGGGAGGCTTTCATGGGACATCCAGATCCAAATGTGCACCATCCAGATCCCCGGAATGCCTATAATGAGTCTCGTGGACATGAAAGGG GATGGGTTTTGCAGCATCAAGCGAGCCCTCGAACTGATGAGGCTAGATCGCATCTCTCCGGTGCTGGAAGGTTCAACGAACATTACATCGTTGATGGTCC TGGCATGA
AA sequence Show only first row Show all	>Lus10001314 pacid=23169294 polypeptide=Lus10001314 locus=Lus10001314.g ID=Lus10001314.BGIv1.0 annot-version=v1.0 MDTPTSATNSNPSTTDFRSDEAPRVKFLCSFLGNIMPRPQDGKLRYVGGETRIVSLSRDIGYEELMSKMRELYGGAAVLKYQQPDEDLDALVSVVNDDDV TNMMEEYEKLGSGDGFTRLRIFLFSQSEQDGSPHFVDGGDDRETERRYVDALNNLNEGRVQIDSPTLMGGVDDVHLQEQFFGRMSLDGGVGGGIHGLRSH DTPLPQYNLRHVAVPQRYSEMEGPWSPAAYYSPRHHGGHPDARSLLEFPNSPPSARYRMPFGEVGPETVAWMHGGGVSGDKAGFPGNLLHGQGVMEGNSS ACDNCHAPFQRSQVGFDQTNMGNGLPHAVNSCNECAPNREAFMGHPDPNVHHPDPRNAYNESRGHERGWVLQHQASPRTDEARSHLSGAGRFNEHYIVDG LWRGCTVEVYPVIKLVFQVICCMVKVLWKVIAPLVITVTPLFKEARWVSTRLIWETVSPMLLILVMSARRIGRLSWDIQIQMCTIQIPGMPIMSLVDMKG DGFCSIKRALELMRLDRISPVLEGSTNITSLMVLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57610			Protein kinase superfamily pro...		Lus10001314 [exp]	0	1
AT5G57610			Protein kinase superfamily pro...		Lus10006977 [exp]	1.0	0.8888
AT5G57610			Protein kinase superfamily pro...		Lus10001315 [exp]	3.7	0.8099
AT3G55420			unknown protein		Lus10040295 [exp]	13.1	0.7918
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	15.2	0.7542
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10009984 [exp]	19.3	0.7545
AT2G05810			ARM repeat superfamily protein...		Lus10029995 [exp]	21.8	0.7165
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	24.0	0.7805
AT3G52240			unknown protein		Lus10043425 [exp]	26.8	0.7119
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	28.4	0.7542
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	31.1	0.6961

Compare expression of checked genes

Lus10001314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.