Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57610 623 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 461 / 2e-150 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 462 / 8e-150 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT3G24715 457 / 2e-148 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 460 / 3e-148 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 454 / 6e-146 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 444 / 9e-143 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 206 / 1e-59 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 206 / 2e-57 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 200 / 4e-55 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006977 [exp] 1191 / 0 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 448 / 3e-154 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 455 / 3e-152 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 455 / 2e-147 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 453 / 3e-145 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 455 / 5e-145 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 365 / 3e-113 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 197 / 3e-54 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10040540 [exp] 197 / 7e-54 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170700 [exp] 792 / 0 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 770 / 0 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 457 / 1e-146 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 458 / 2e-146 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 459 / 3e-146 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 449 / 2e-145 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 449 / 3e-144 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 453 / 8e-144 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 445 / 8e-144 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.007G069500 [exp] 446 / 6e-143 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001315 pacid=23169301 polypeptide=Lus10001315 locus=Lus10001315.g ID=Lus10001315.BGIv1.0 annot-version=v1.0 ATGGGTAATGAAGCATTTCCGGATCCATCTATGACTCCTGGACATCGCCAACATGTTGCACCAGTTGACGACCGTGGCATCAGATATGGGAATTTTCCTG GTGCTTATGGTACTGAAACTATCTATCAGATGCCTAATGGGCATGCTCATGGACAGAGTTTGTGGAGAAATGTACCAAATCCCATGCTCGGAGGTCCTTT TGAAGCATCCGCCGGAACACCTCAAGTCAATGGTACAGTTAACCCTGCATATATCAGAGGTACAGTAGAGGGAGGACCAAGGGTTGGAGCTGTTGGCATT GATGCTCAGCAACCTTGGTCCGACCCCTCACAAGCGAGGTTGGGTTTTGATGCCATGCCGATTCCAGATTATGCTTATGCCCCTACGTTGAGAACTAATG CAGCTAACTATGGTGTGGAAACTAGTCACCCAATTGCTCCAGAATCCACTCGTCATCCACTTCCACGTGAAATGACAAATTCACTTGCTCCTATAGCCAC TGTTGGTCGCATGCATAGTGGATTCGGCTGCACCAGTGTCCCTGAATTGGCAAAACAAGAAGTGACGAATGTTGCAGGCACAGAAGTAGATGCAATTTAT GCAGATAAATCGACTATGGTTCATGTTGCCGACACAAATCCTGAAGCAGTTTTGGTGAATTTGTCACACTCAAACAACGTAAGGAATCCTAATGAAAGCA ATCTCATGCAAGTCGGCGACAAGAACCCTTCTGCTTCTGATGGGGTCTCAAAGTTATCTGTTGATGGCTTAAGTTACTTACCCGAGTTAATTGCCTCTGC AAAGAAAGCTGCATTGGAAGAGGCAGAGGAAGTGAAAGCGAGAGTTGAAGAAGATGCCTCCCACTTGAAGGATAACACAGTGTCAAAAGAAGCTACTCTG AAGGAGCCTGAAGCAGTGAATGGCAATGAAGAAGTAGAGTTAGATCATGAAAGTAATAATTCAAACCTCAACAAGATTGAGCCCACGAAGGCTGAGGCAG AAGCTATCGAAAGGGGATTACAGACTATAAGAAATGACGATTTGGAGGAGATTCGTGAATTGGGTTCAGGAACATATGGAGCTGTTTATCATGGGAAATG GAAGGGCTCTGATGTGGCTATAAAAAGAATCAAGGCTAGTTGTTTTGCTGGGAGACCTTCTGAGAGAGCACGACTGATTGCAGACTTTTGGAAGGAAGCA TTGATATTGAGTTCGCTTCATCATCCCAATGTCGTCTCTTTCTATGGTATAGTTCGTGATGGACCTGATGGGTCTCTAGCAACCGTAACAGAGTTCATGG TCAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGGACCATTGACCGGCGGAAAAGGCTCATCATAGCCATGGACGCAGCATTTGGCATGGAGTA TCTGCACGGGAAGAATATTGTTCATTTTGATCTGAAATGTGAAAACCTCTTGGTAAATATGAGAGACCCGCAACGGCCAATCTGCAAGATTGGCGATTTG GGCTTATCTAAAGTCAAACAGCAAACACTTGTCTCCGGTGGGGTTCGTGGAACTCTACCCTGGATGGCCCCTGAGCTTCTTAGTGGGAAAAACCACATGG TAACTGAGAAGATTGATGTTTACTCCTTTGGGATTGTGATGTGGGAACTGCTGACCGGTGAAGAACCTTATGCTGATATGCATTGTGCCTCAATAATAGG AGGGATCGTAAACAACACGTTACGACCAAAGATTCCAACTTGGTGCGATCCCGAATGGAAATCTTTGATGGAAAGTTGCTGGGCTTCTGAACCGGCAGAC AGGCCATCGTTTTCCGAAATCTCTCGAAAGCTCAGGACCATGGCTGCTGCAATCAACGTGAAATAA
AA sequence Show only first row Show all	>Lus10001315 pacid=23169301 polypeptide=Lus10001315 locus=Lus10001315.g ID=Lus10001315.BGIv1.0 annot-version=v1.0 MGNEAFPDPSMTPGHRQHVAPVDDRGIRYGNFPGAYGTETIYQMPNGHAHGQSLWRNVPNPMLGGPFEASAGTPQVNGTVNPAYIRGTVEGGPRVGAVGI DAQQPWSDPSQARLGFDAMPIPDYAYAPTLRTNAANYGVETSHPIAPESTRHPLPREMTNSLAPIATVGRMHSGFGCTSVPELAKQEVTNVAGTEVDAIY ADKSTMVHVADTNPEAVLVNLSHSNNVRNPNESNLMQVGDKNPSASDGVSKLSVDGLSYLPELIASAKKAALEEAEEVKARVEEDASHLKDNTVSKEATL KEPEAVNGNEEVELDHESNNSNLNKIEPTKAEAEAIERGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEA LILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKIGDL GLSKVKQQTLVSGGVRGTLPWMAPELLSGKNHMVTEKIDVYSFGIVMWELLTGEEPYADMHCASIIGGIVNNTLRPKIPTWCDPEWKSLMESCWASEPAD RPSFSEISRKLRTMAAAINVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57610			Protein kinase superfamily pro...		Lus10001315 [exp]	0	1
AT5G57610			Protein kinase superfamily pro...		Lus10006977 [exp]	1.4	0.8763
AT5G57610			Protein kinase superfamily pro...		Lus10001314 [exp]	3.7	0.8099
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	13.2	0.8354
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	15.9	0.8340
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10025885 [exp]	16.0	0.8217
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Lus10034214 [exp]	18.2	0.8169
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	24.4	0.8157
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	29.3	0.8062
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	33.4	0.7965
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	36.9	0.7996

Compare expression of checked genes

Lus10001315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.