Plant FIBer expression Database

Lus10001317 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13120 256 / 3e-76 EMB1745 embryo defective 1745 (.1)
AT4G05523 68 / 9e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006979
[exp]
910 / 0 AT1G13120 479 / 1e-157 embryo defective 1745 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G183500
[exp]
386 / 1e-125 AT1G13120 309 / 1e-96 embryo defective 1745 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07817 GLE1 GLE1-like protein
Representative CDS sequence
>Lus10001317 pacid=23169291 polypeptide=Lus10001317 locus=Lus10001317.g ID=Lus10001317.BGIv1.0 annot-version=v1.0
ATGCTGAATCGATCGGGATTCGGATTCCCGCGGTGGAACGATGGTAGTAGGTTTGATCGGACTGATGAAGCGGGTTGTCGTAGGTTTGAGCGAGGTCGTA
GCCGCCGCCGTGAGGGACCTTTGAAATTGGAACTTCGTTGTTCACAGAAAGTGCATGAGATTGCACCTGATCCCCAGCCGGACTGGAGCTTTGATTCACT
GCTTTTGGAGCTTGATTCGCTTGAAAAGAAGCTTGCTTCTTCCTCCAGTTTCCCAGTACCCTATACTAAGAATCAGTCTCGGGGGATTGCAAATCTGAAA
ACTGGTGAGAGTCTGGAGAGGCCTGTGGCGTTTTCCATGAGGCTGTCTGAAGAGGAGCTAGAAGTTTCTGATGATAATGATGATGATGATGATGAAGGGA
ATGATGATAATAGATGTTTGGTAGCAGCTAAAAGGTTCAATTTTGATTCTTTTTATGAAAGCGAGACTGATGATTCGGACCAGGAGTTTGGTCTTGATGT
CCAACCCTACTTGATGGATGAAGTTGGGTTAGTGGAAGGTGCGCTGCTTGAACGAAGTCATGATCATCAACTTGAATTGAAGGAGGAGATTAGAAGCCAA
ATCTCTGCGATGGAGATGGAGTTGATGGGCAAAAGTCAGAAGCATTCTCAAGCATTTGCTCGCATTGACAAGTATACTGAAGCAAGAAGGGAAACAGACC
GGAAATTCGACACTCTATACCAGCGTAAAATTGCAGAAGCACTAGATGATCACTTGACTGCTATCCAGCGGGATCATGAACTCAAATCTCAGATAGAAGA
AAGAAGAATAAGGAGTGATGCAGCTTACGAAGAGGCAAAGAGAAAAGAACGGGCCATTCAAGAAGAGAGAATTCGTCAAGAAAGAGCCAGAGAAGAAGCA
GAGGCTACACGTAGAACCGAGGAAGCAAGAGCAGCTGCATTGGAAGCAGAAAACAAAGCAAAAGAGGAGGCAGCAAAAAGGGAAGCTTTGAAAAATGCTA
CTGCTGTTGTTTCTTCTGTGCAAGCTACGAATCTGGATACACAGTCACAGCCATCCAAATCTGATGGTAATCAAGCTTCACTGTCTAAAGGTCAAATAGT
TAGAGCTTCTGAAGCAGCTCTTGCTCTGGAAGAGGCAAGGTTGCAGAAGCTTAGAGACCTTAATGAGAATAACCAGTCTATCATGTCAAGACCCAATACG
GAGAGGCATATCACAAGAATAATTAAACAGATACAGGGAATAGAAGAAAACGTTAGAACAAAAACAAGCGATCTAATGCAGATTTTCAACAACCCTTCAT
GCCCTCAGTCCATCTCTGTTGCAGCCTTTGCAAAGAAGGTTGTTGCACATTGTGAAAACCCTAACATTTCTGCATTTGCATGTGCGCAAGTAATCATCCG
CATAACTTCTCAGATCCCATATGCAATGGATGTCATTCTTGCTGAACTCCATAAAGCTTGTATCTACACCGTCCCGAAGCATGTAGCATACTCGCAGGCA
GCATTCAGTAGCAAGAAGGAGTATTACAAAAACCACCTCGGGTTTAAGGAAGAAGATGGAAAAATTGAGACTTTCGAGAATTACTCGGAACGTATGAAAG
CGTACATGACCCTATACGGAGCACTAGTCCAGACCGAAGTACATGGTTTTCAGAACCCTCATGGCTCGAAAGAAGGTTGGTCGTGGCTAGCCAGGTTCTT
AAACTCGCTCCCTGCAAATGAATTCACCGCAGCGGCATTAAATGCATTCCTCCAAACAGCAGGGTTTGTGCTGTACAGAAAGTACAAGTCCCAGTTTGCA
AAAATGCTGCACATTGTGCTGAACGACTTTGTAAAGGCGTTGAAAAGCCGAAACAACAAGGAGCTGAGCCATATAGTTGCGGCGATCGAGTCGTACATTC
TAGACAAGATGTTTCTGCGGGAGCCTGAAGGGAGGAGGATGGGAAATAAGCTGGATTCCAGCAAGATGGGTCTGGGATGGGAGTTTGATAATCCGTATTA
CCGGCGGTGA
AA sequence
>Lus10001317 pacid=23169291 polypeptide=Lus10001317 locus=Lus10001317.g ID=Lus10001317.BGIv1.0 annot-version=v1.0
MLNRSGFGFPRWNDGSRFDRTDEAGCRRFERGRSRRREGPLKLELRCSQKVHEIAPDPQPDWSFDSLLLELDSLEKKLASSSSFPVPYTKNQSRGIANLK
TGESLERPVAFSMRLSEEELEVSDDNDDDDDEGNDDNRCLVAAKRFNFDSFYESETDDSDQEFGLDVQPYLMDEVGLVEGALLERSHDHQLELKEEIRSQ
ISAMEMELMGKSQKHSQAFARIDKYTEARRETDRKFDTLYQRKIAEALDDHLTAIQRDHELKSQIEERRIRSDAAYEEAKRKERAIQEERIRQERAREEA
EATRRTEEARAAALEAENKAKEEAAKREALKNATAVVSSVQATNLDTQSQPSKSDGNQASLSKGQIVRASEAALALEEARLQKLRDLNENNQSIMSRPNT
ERHITRIIKQIQGIEENVRTKTSDLMQIFNNPSCPQSISVAAFAKKVVAHCENPNISAFACAQVIIRITSQIPYAMDVILAELHKACIYTVPKHVAYSQA
AFSSKKEYYKNHLGFKEEDGKIETFENYSERMKAYMTLYGALVQTEVHGFQNPHGSKEGWSWLARFLNSLPANEFTAAALNAFLQTAGFVLYRKYKSQFA
KMLHIVLNDFVKALKSRNNKELSHIVAAIESYILDKMFLREPEGRRMGNKLDSSKMGLGWEFDNPYYRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G13120 EMB1745 embryo defective 1745 (.1) Lus10001317
[exp]
0 1
AT5G22220 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2... Lus10013321
[exp]
5.0 0.8165
AT1G12340 Cornichon family protein (.1) Lus10004023
[exp]
5.7 0.7828
AT2G20980 MCM10 minichromosome maintenance 10 ... Lus10014124
[exp]
16.1 0.7627
AT1G13120 EMB1745 embryo defective 1745 (.1) Lus10006979
[exp]
19.3 0.7574
AT3G48710 DEK domain-containing chromati... Lus10025759
[exp]
23.3 0.8078
AT3G45980 H2B, HTB9 HISTONE H2B, Histone superfami... Lus10040855
[exp]
24.0 0.7703
AT5G42700 B3 AP2/B3-like transcriptional fa... Lus10019873
[exp]
26.5 0.7445
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Lus10031799
[exp]
28.6 0.7509
AT3G01410 Polynucleotidyl transferase, r... Lus10014521
[exp]
30.5 0.7478
AT3G48425 DNAse I-like superfamily prote... Lus10043333
[exp]
31.0 0.7402

Lus10001317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.