Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 404 / 3e-137 MATE efflux family protein (.1) AT1G73700 369 / 1e-123 MATE efflux family protein (.1) AT2G34360 362 / 6e-121 MATE efflux family protein (.1) AT1G71140 339 / 6e-112 MATE efflux family protein (.1) AT1G15150 300 / 2e-96 MATE efflux family protein (.1) AT1G15170 298 / 1e-95 MATE efflux family protein (.1) AT1G15160 293 / 5e-94 MATE efflux family protein (.1) AT1G15180 288 / 7e-92 MATE efflux family protein (.1.2) AT1G66760 286 / 4e-91 MATE efflux family protein (.1.2) AT2G04040 281 / 2e-89 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006979 [exp] 556 / 0 AT1G13120 479 / 1e-157 embryo defective 1745 (.1) Lus10041994 [exp] 389 / 4e-131 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10017998 [exp] 352 / 2e-116 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 333 / 3e-110 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10018136 [exp] 322 / 9e-105 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10019492 [exp] 319 / 5e-104 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10042732 [exp] 313 / 7e-102 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 312 / 4e-101 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 310 / 3e-100 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171240 [exp] 518 / 0 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 518 / 0 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.012G051900 [exp] 441 / 2e-151 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 408 / 2e-138 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 343 / 3e-113 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 322 / 3e-105 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.008G126500 [exp] 311 / 1e-100 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 308 / 2e-99 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094700 [exp] 293 / 1e-93 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120600 [exp] 292 / 2e-93 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10001318 pacid=23169298 polypeptide=Lus10001318 locus=Lus10001318.g ID=Lus10001318.BGIv1.0 annot-version=v1.0 ATGGATCTTCTTCGACACACCAAACCCGCCACTACCAATCTCCAAACTCCATTAACCCTCCACTCAGAAGAAAGGTTTTCCAGAAAGGAGATCTTTGAAG AAGTGAAGAAGCAGCTATGGCTTGCTGGTCCACTCGTCTCTTACAATATGTTGACTTACATGTTACAGATCATCTCCGTCATGTTCGTCGGCCATCTCGG CGAGTTGGAGCTCGCCGGCGCTTCATTGGCGACCTCCTTCTCTTCCGTCACCAGCATCACTCTCCTGAAAGGAATGGGGAGTGCATTGGAGACATTATGC GGCCAATCGTACGGAGCAAAACAATACAGCGCAATCGGAATCCACCTCCAACGATCCCTAATCGTACTCCTCCTCGCCGCAATCCCACTCTCCTTCGCCT CATTCTACGCCGGCGAAATCCTCCTTTTCCTCGGCCAGGATCCCGAGATCTCAACCTCCGCCGGAAGCTACGCCAAGTTCGTGATCCCGAGCATATTCGG GTTCGCGATCCTAGAATCGCACGTCAAGTTCCTCCAATCGCAGAACAACGTCCTGCCGCTGACGGCGACGACCGGGTTCACTACCCTGCTCCACGTTCTG GTGTGCTGGACTCTGGTTTTCAAATCCGGATTGGGGAACAGGGGAGCTGCGATAGCGAACGGGATCGCGTATTGGATCAATGGCGTCTCGTTGTTCGTCT ACGTTAGGGTTTCGAGCAGCTGTGAGAGTTCTTGGACTGGTTGGTCTAGAGAGGCTCTGCGCGGGATTCCTGGGTTTGTTAGATTGGCGGTTCCTTCTGC TGTAATGCTCAGCTTGGAGCTTTGGTCATTTGAGATGATGGTTCTGTTGGCCGGTTTGCTTCCGAATCCGAAACTCGAGACATCGGTTCTTTCCATAAGC TTGAACACAACTGCAATCATCTACATGATACCACTTGGTATTAGTGCCACAGCTAGTACAAGGGTTTCAAACGAACTGGGTGCCGGGAGACCACGAGCAG CTCTTCTTGCCGTTTATGTCTCGGTGGCCATTGTTGTGACGGAAGCAATTTTTGCGGCAGCCGTCATGGTATTAGGGCATAATGTCTGGGGTTACTTGTA CAGCAAGGAAGAGGAATTAGTGAAATACGTCGGAGAAATGATGCTGATTGGTGCTGCTTTCCACTTGTTTGATGGCATCCAATCGGTTCTCTCAGGGATC TGCAGGGGATGTGGAAGGCAGAAAGTTGGTGCTCTTGCCAATTTGGGTGCTTACTATCTACTGGGAATTCCTTGCTCCGTAGTTCTGGCTTTTGTCTGCC ATTGGGGTGGAAAGGGTCTTTGGTTAGGCATCACTGTAGCAGTGTTCTCACAGGCTGTGTTCATGACGATATTGACTGTCAACACTGATTGGGAGAAAGA GGCAAGAAAGGCTAAAGATAGGGTTTACAGTGCCGTCACCGCAGAAACAAGTCTGCTCTCGTAG
AA sequence Show only first row Show all	>Lus10001318 pacid=23169298 polypeptide=Lus10001318 locus=Lus10001318.g ID=Lus10001318.BGIv1.0 annot-version=v1.0 MDLLRHTKPATTNLQTPLTLHSEERFSRKEIFEEVKKQLWLAGPLVSYNMLTYMLQIISVMFVGHLGELELAGASLATSFSSVTSITLLKGMGSALETLC GQSYGAKQYSAIGIHLQRSLIVLLLAAIPLSFASFYAGEILLFLGQDPEISTSAGSYAKFVIPSIFGFAILESHVKFLQSQNNVLPLTATTGFTTLLHVL VCWTLVFKSGLGNRGAAIANGIAYWINGVSLFVYVRVSSSCESSWTGWSREALRGIPGFVRLAVPSAVMLSLELWSFEMMVLLAGLLPNPKLETSVLSIS LNTTAIIYMIPLGISATASTRVSNELGAGRPRAALLAVYVSVAIVVTEAIFAAAVMVLGHNVWGYLYSKEEELVKYVGEMMLIGAAFHLFDGIQSVLSGI CRGCGRQKVGALANLGAYYLLGIPCSVVLAFVCHWGGKGLWLGITVAVFSQAVFMTILTVNTDWEKEARKAKDRVYSAVTAETSLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10001318 [exp]	0	1
AT2G27710			60S acidic ribosomal protein f...		Lus10014070 [exp]	54.6	0.7521
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	66.3	0.8064
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	66.4	0.8009
AT3G25400			unknown protein		Lus10020407 [exp]	95.0	0.8008
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10012912 [exp]	109.1	0.7588
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	119.6	0.7493
AT1G11340			S-locus lectin protein kinase ...		Lus10034637 [exp]	162.8	0.7555
					Lus10037168 [exp]	167.3	0.7700
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	169.8	0.7684
AT5G45310			unknown protein		Lus10001616 [exp]	195.1	0.7531

Compare expression of checked genes

Lus10001318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.