Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25770 410 / 2e-142 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 327 / 7e-110 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G51180 284 / 6e-94 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 233 / 8e-73 Hydrolase-like protein family (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006982 [exp] 611 / 0 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 286 / 1e-94 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 274 / 1e-89 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001893 [exp] 230 / 1e-71 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10013909 [exp] 225 / 7e-70 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096035 [exp] 467 / 5e-165 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 335 / 5e-113 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 276 / 5e-91 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 275 / 1e-90 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 228 / 8e-71 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Lus10001320 pacid=23169297 polypeptide=Lus10001320 locus=Lus10001320.g ID=Lus10001320.BGIv1.0 annot-version=v1.0 ATGTCGCCGGTTGGTTGCTTCGGTACCCGGAGGAGGACGGAGACTAAGGGCGGCGGGTTGAAAGTGGAGATTGATAGTGGTGGGGAAGATGTTTTCAATT CTGAATCTAGGGTCTTCCCGGAACATCTCGTCATCATGGTCAATGGGCTCATCGGAAGCTCTGCAGATTGGAGATATGCAGCTGGGCAGTTTGTGAAGAA GCATCCGGATAACCTGATTGTGCATAGGAGTGAATGCAATTCGTCAAAGTTGACATTCGACGGGGTAGATTTGATGGGCGAAAGGCTGGCCGAGGAGGTA CGATTGGTTGTCAGGCGTCGGCCTGAAGTGCGGAAGATCTCGTTTGTTGCTCACTCATTAGGTGGACTCATTGCAAGGTACGCTGTAGCGAGACTGTATG AGCAAATACCAAAGACGGCTCATTCGGGAGGTGGAATGCAACAAGCTCTTGATCAGCCTTATGAAGCTAGGATTGCAGGGCTGGAACCTATTAACTTCAT AACCTTTGCATCGCCCCATCTTGGTTCGCGGGGACATAAGCAGTTCCCAATTCTCTGTGGTCTTCCATTTCTTGAGAGGAGAGCATCTCAGACTGCCCAC TTAGTTGCTGGGAAGACTGGAAAACATCTTTTCCTTACTGATCATGATGAGGGAAAACCACCTCTTCTCCTACGAATGGTGAATGATTCAGACGACTTAA AATTCATATCAGCTTTGCGCTCATTCAAACGCCGGGTGGTTTACGCAAACGCGAATTTCGATTATATGGTTGGATGGGGGACATCGTCGATCAAGCGTCA AGATGAATTACCAAAGTCAACATCACTTGTACTTGACGAGAAATATCCACACATAGTCTACATTGAGCCTGAAAATACAGGAAACAAGCTTGAGAAGTCA CCTTCCTATCGTCCCGTGGACCAGACAACGGATCTAGAAGAGATGATGATCAAAGGTCTTACTCAAGTACCTTGGGAACGAGTGCACGTGAAGAGCTACT GGTTGAATTCAGATGGTGCCGACGTGATTTTCCATATGATAGATAACTTCCATCTCTAG
AA sequence Show only first row Show all	>Lus10001320 pacid=23169297 polypeptide=Lus10001320 locus=Lus10001320.g ID=Lus10001320.BGIv1.0 annot-version=v1.0 MSPVGCFGTRRRTETKGGGLKVEIDSGGEDVFNSESRVFPEHLVIMVNGLIGSSADWRYAAGQFVKKHPDNLIVHRSECNSSKLTFDGVDLMGERLAEEV RLVVRRRPEVRKISFVAHSLGGLIARYAVARLYEQIPKTAHSGGGMQQALDQPYEARIAGLEPINFITFASPHLGSRGHKQFPILCGLPFLERRASQTAH LVAGKTGKHLFLTDHDEGKPPLLLRMVNDSDDLKFISALRSFKRRVVYANANFDYMVGWGTSSIKRQDELPKSTSLVLDEKYPHIVYIEPENTGNKLEKS PSYRPVDQTTDLEEMMIKGLTQVPWERVHVKSYWLNSDGADVIFHMIDNFHL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	0	1
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	1.0	0.9649
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	1.4	0.9549
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	3.0	0.9423
AT5G11970			Protein of unknown function (D...		Lus10017155 [exp]	4.7	0.9291
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	5.1	0.9282
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	5.9	0.9421
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	6.3	0.9305
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	8.0	0.9423
AT2G17990			unknown protein		Lus10041920 [exp]	8.2	0.9222
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	8.3	0.9166

Compare expression of checked genes

Lus10001320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.