Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57655 785 / 0 xylose isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006983 [exp] 871 / 0 AT5G57655 781 / 0.0 xylose isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096049 [exp] 813 / 0 AT5G57655 813 / 0.0 xylose isomerase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01261 [flax] [poplar] AP_endonuc_2 Xylose isomerase-like TIM barrel
Representative CDS sequence Show only first row Show all	>Lus10001321 pacid=23169293 polypeptide=Lus10001321 locus=Lus10001321.g ID=Lus10001321.BGIv1.0 annot-version=v1.0 ATGATCAAGATGAAGGGCTCGAGGAATTTGTTGCTTCTCCTTTGTTTGATTGTTGCCGCTTATGCAGTGATTGCTGCTGCACCACCTACTTGCCCTGCGA ATCTCGAGGGAGGATGTGGCGATTCTGATGAATGGAAAGGCGAATTCTTCCCTGGAATTCCCCAAATTAAGTATGAGGGTCCTAGTAGTAAGAACCATCT TGCATACAAATGGTACAATGCTGAAGAAGTCATTCTGGGGAAGAGAATGAAGGATTGGATGCGATTCAGCGTTGCGTTCTGGCATACATTTCGAGGTGTG GGAGTCGATCCTTTCGGTGGACCTACCAAGTTCTGGCCTTGGGAGGACGGTACTAATTCAGTGGCTATGGCCAAAAGGAGAATGAGAGCCAACTTTGAGT TGTTGGAAAAGCTTGGAGTAGACTACTGGTGTTTCCATGATAGGGATATTGCTCCTGAGGGCAGCACTCTCAAGGAAAGTAATGCAAACTTGGATGAAGT GGTGGCTCTTGCTAAGGAGCTTCAGGGAAGTAAGATCAAACCCTTGTGGGGGACCGCTCAGCTATTCGTGCAGCCTCGTTACATGCATGGTGCTGCTACG AGCTCGGAGCTTGGTGTATATGCATATGCTGCTGCACAAGTTAAGAAAGCTATGGAGGTTACACATTACTTGGGTGGAGAAAACTATGTCTTTTGGGGAG GAAGGGAGGGTTACCAGACTCTCTTGAATACAGATATGGAAAGAGAACTTAACCATTTGGCTAGTTTCTTCCACTCTGCTGTTGCATACAAGAAAAAGAT TGGATTCAACGGTACTTTGCTAATTGAGCCGAAGCCTCAAGAACCAACTAAACACCAGTATGATTGGGATGCAGCCACAAGTGCGAATTTCTTGAGGAAA TACGACCTTCTAGGAGAGTTCAAGCTCAACATCGAGTGCAACCATGCCACTCTTTCTGGTCACAGCTGTCACCATGAACTCGAAACCGCACGGATCAATG GGTTGCTGGGTAATATCGATGCCAACACCGGTGACCCTCAAGTTGGATGGGATACTGATCAGTTCATGACTGATATATCTGAGGCGACTATGGTCATGCT TAGTGTCATTAGAAATGGCGGACTGGCACCAGGAGGATTCAACTTTGATGCAAAACTGCGAAGAGAGAGCACAGATGTTGAGGACATCTTCATTGCTCAT GTTAGTGGAATGGATACGTTGGCTCGTGGCCTCCGAAACGCTGCTAAGCTGATCGAGGATGGATCTTTGAGCAACCTTGTTCTCAAGAGGTATGAGAGCT TCGACTCCGAAATCGGGAAGAAGATTGAGGCTGGGGAAGCCGATTTCGAGCTTCTGGAGAAGAAAGCACTTGAATGGGGTGAACCCAAGGTTCCTTCTGC CAAGCAGGAACTTGCTGAGATGCTGTTCCAGTCAGCTTTGTAG
AA sequence Show only first row Show all	>Lus10001321 pacid=23169293 polypeptide=Lus10001321 locus=Lus10001321.g ID=Lus10001321.BGIv1.0 annot-version=v1.0 MIKMKGSRNLLLLLCLIVAAYAVIAAAPPTCPANLEGGCGDSDEWKGEFFPGIPQIKYEGPSSKNHLAYKWYNAEEVILGKRMKDWMRFSVAFWHTFRGV GVDPFGGPTKFWPWEDGTNSVAMAKRRMRANFELLEKLGVDYWCFHDRDIAPEGSTLKESNANLDEVVALAKELQGSKIKPLWGTAQLFVQPRYMHGAAT SSELGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTLLNTDMERELNHLASFFHSAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATSANFLRK YDLLGEFKLNIECNHATLSGHSCHHELETARINGLLGNIDANTGDPQVGWDTDQFMTDISEATMVMLSVIRNGGLAPGGFNFDAKLRRESTDVEDIFIAH VSGMDTLARGLRNAAKLIEDGSLSNLVLKRYESFDSEIGKKIEAGEADFELLEKKALEWGEPKVPSAKQELAEMLFQSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	0	1
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	1.4	0.9846
AT1G19530			unknown protein		Lus10002540 [exp]	1.7	0.9795
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	2.4	0.9797
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	5.5	0.9707
AT1G29640			Protein of unknown function, D...		Lus10002781 [exp]	5.7	0.9539
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	7.4	0.9647
AT5G24890			unknown protein		Lus10009793 [exp]	7.5	0.9635
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008753 [exp]	7.7	0.9625
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	8.7	0.9722
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	9.0	0.9558

Compare expression of checked genes

Lus10001321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.