Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 353 / 4e-120 Protein kinase superfamily protein (.1) AT3G15890 333 / 2e-112 Protein kinase superfamily protein (.1) AT1G70460 290 / 1e-91 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT5G38560 286 / 2e-90 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 281 / 5e-90 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G26940 278 / 8e-90 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT1G68690 285 / 1e-89 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G24550 284 / 1e-89 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G26150 285 / 8e-89 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT4G34500 273 / 5e-88 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006985 [exp] 746 / 0 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10019988 [exp] 645 / 0 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10031673 [exp] 441 / 3e-154 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10011490 [exp] 435 / 2e-152 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 412 / 3e-143 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10035071 [exp] 294 / 1e-93 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10017898 [exp] 292 / 4e-92 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10011098 [exp] 287 / 6e-91 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 280 / 5e-89 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G173800 [exp] 603 / 0 AT1G52540 344 / 4e-117 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 441 / 1e-154 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.015G134500 [exp] 433 / 2e-151 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 430 / 3e-150 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 427 / 2e-149 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 295 / 2e-93 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 285 / 5e-90 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.004G105200 [exp] 286 / 1e-89 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 285 / 2e-89 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 274 / 4e-89 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001323 pacid=23169300 polypeptide=Lus10001323 locus=Lus10001323.g ID=Lus10001323.BGIv1.0 annot-version=v1.0 ATGGGAGCAGTCTTCAGCTGTTGTGCCGAAGGCACAGGCGAAGAACGATCGATGAAGGATGCAGGGACGACGAACGTGGTAGCCCCGAATTACACGTCGT GGAGGATCTTCACGTACAAGGAGCTTCAAATAGCCACCAATGGGTTTAGTGAAGACAACAAACTGGGAGAAGGAGGGTTCGGGAGTGTCTATTGGGGCAA AACCAACGACGGTCTTCAGATTGCGGTGAAGAAGTTGAAGGCTATGAACTCAAAGGCGGAGATGGAGTTTGCGGTGGAAGTGGAAGTACTTGGAAGGGTT CGCCATAAGAACTTGCTTGGCCTTAGAGGCTATTGTGCCGGCACCGACCAACGGCTGATAGTTTATGATTACATGCCGAATCTCAGCCTCCTCTCCCACC TCCACGGCCAGTTCGCCGGCGAATCTCAACTGAATTGGAAGCGCCGGATGAAGGTCGCCATTGGCTCCGGTGAAGGCTTGATGTATTTGCACCACGAGGC GGCACCTCACATAATCCACAGGGACGTAAAGGCTAGCAATGTCCTTCTCGACTCGAATTTCGACCCACTGGTAGCCGATTTCGGGTTCGCAAAGTTGATT CCAGATGGCGTAAGCCACATGACAACACGTGTCAAAGGAACCCTAGGTTACTTAGCCCCCGAGTACGCTATGTGGGGTAAAGTCTCTGAGAGTTGCGATG TGTACAGCTTTGGGATCTTGCTGCTAGAAATCGTAACGGGCCGAAAACCCATTGAGAAGATGCCCGGCGGAGTTAAGCGGACCATAACCGAATGGGCCGA GCCGTACATAGTCCAGGGGAAGTTCAAGGACATGGTTGACCCGAAACTCCGGGGGAACTTTGACGAGAACCAAGTCAAACAAGCCATATACGTCGCCGCA CTGTGCGTGCAGAACGAGCCCGAAAAGCGGCCCAACATGAAGGAAGTGGTCAACATGTTGAAGAACTATGATTCGAGGAGTAGGCCGATTCAGGCCCGAT TGGAGAGCATCAAGTATAGAGAGGATTTGATGGCGATGGATCAGTCGGATGATGAGGACGAAGAGGGAAACGACGGTAGAGGTGGCGGTGGAGGAGGAAA CCGCGGTGGCGGGTTGCCGGAGGAGAGTGGGTATGGGGTGTTTAGTGCTTTGGAATTGCCTACATTACATGATCCACACAAACGACATGGGAACACCAAG AGATTTGTGTGA
AA sequence Show only first row Show all	>Lus10001323 pacid=23169300 polypeptide=Lus10001323 locus=Lus10001323.g ID=Lus10001323.BGIv1.0 annot-version=v1.0 MGAVFSCCAEGTGEERSMKDAGTTNVVAPNYTSWRIFTYKELQIATNGFSEDNKLGEGGFGSVYWGKTNDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRV RHKNLLGLRGYCAGTDQRLIVYDYMPNLSLLSHLHGQFAGESQLNWKRRMKVAIGSGEGLMYLHHEAAPHIIHRDVKASNVLLDSNFDPLVADFGFAKLI PDGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVTGRKPIEKMPGGVKRTITEWAEPYIVQGKFKDMVDPKLRGNFDENQVKQAIYVAA LCVQNEPEKRPNMKEVVNMLKNYDSRSRPIQARLESIKYREDLMAMDQSDDEDEEGNDGRGGGGGGNRGGGLPEESGYGVFSALELPTLHDPHKRHGNTK RFV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	0	1
					Lus10032002 [exp]	1.0	0.9734
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	2.0	0.9221
					Lus10001069 [exp]	2.4	0.8569
AT5G20260			Exostosin family protein (.1)		Lus10027707 [exp]	4.0	0.7302
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	8.9	0.7679
					Lus10008346 [exp]	10.3	0.5957
					Lus10030066 [exp]	11.7	0.6541
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	13.0	0.7333
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	14.3	0.7333
AT1G63820			CCT motif family protein (.1)		Lus10032288 [exp]	15.2	0.5558

Compare expression of checked genes

Lus10001323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.