Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17820 317 / 5e-108 Peroxidase superfamily protein (.1) AT4G26010 311 / 9e-106 Peroxidase superfamily protein (.1) AT3G03670 288 / 1e-96 Peroxidase superfamily protein (.1) AT1G34510 285 / 2e-95 Peroxidase superfamily protein (.1) AT5G42180 243 / 1e-78 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G22410 239 / 4e-77 RHS18 root hair specific 18 (.1) AT5G51890 236 / 4e-76 Peroxidase superfamily protein (.1) AT4G11290 235 / 1e-75 Peroxidase superfamily protein (.1) AT5G06720 228 / 7e-73 ATPA2 peroxidase 2 (.1) AT4G36430 227 / 2e-72 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013631 [exp] 610 / 0 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10005679 [exp] 439 / 2e-155 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1) Lus10020312 [exp] 424 / 6e-143 AT1G04170 845 / 0.0 eukaryotic translation initiation factor 2 gamma subunit (.1) Lus10005681 [exp] 335 / 1e-114 AT5G17820 294 / 9e-99 Peroxidase superfamily protein (.1) Lus10018375 [exp] 267 / 7e-88 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10004859 [exp] 265 / 4e-87 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10031664 [exp] 253 / 1e-82 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10032511 [exp] 253 / 2e-82 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10027405 [exp] 251 / 1e-81 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G066800 [exp] 343 / 1e-117 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 264 / 7e-87 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 261 / 8e-86 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.015G003500 [exp] 256 / 9e-84 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 249 / 5e-81 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 243 / 2e-78 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 242 / 2e-78 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 242 / 3e-78 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 241 / 5e-78 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 239 / 5e-77 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10001324 pacid=23146550 polypeptide=Lus10001324 locus=Lus10001324.g ID=Lus10001324.BGIv1.0 annot-version=v1.0 ATGGTTGCTAAGAAGATGTCTGTGCTTATTGTGGGTTATGTCTTCTTTCTCTGCAACGCTGTTGCAGTATCTGCAGGCGCAGACGGTATGAAAGTGGGGT TTTACAAATCGACCTGCCCAGAAGCTGAAACCATTGTACGGAAGGTTGTTCAGAAATGGTACAACAATGACAGATCCATCCCAGCTGCTCTGCTTCACTT GCAATTTCACGACTGTTTCGTCAACGGATGTGACGCGTCAATACTGATAGACTCAACGGCCCAAAATCCATCAGAGAAAGCCGCGGGGCCCAGCCAAACA GTCCGAGGCTACGACCTCCTCGACGCCGTCAAGGCTGAGTTAGAAGCCGCATGTCCGTCACGAGTTTCCTGTGCCGACATTGTCGCACTCGCCACCAGAG ACGCAGTGGTCCTCGCCGGCGGCCCCACCTACGCCCTCCCGACAGGAAGGCTGGACGGCGTCGTATCCAAACCCAGTGACGTCAAACTCCCCGGCCCCAC ACTTAACATCTCCCAAGCCTTCACTCAGTTCTTCCAACCGCTCGGCTTCACCCTCGCGGAAATGGTCACCCTCCTGGGGGCCCACACTGTAGGGGTGGCC CACTGCTCCTCGTTTCGCGATCGGATATCCGATTTCAAAGGAACCGGGCGGCCTGACCCGTCCATGGACCCGAACTTGGTCGTCAGCCTACGCAAGACCT GCTCTACTACTGGAAGTAATAAAAATAATAACACTAATCCGACAGCGTTTTTGGACCAGAATACATCGTTCGCTGTTGACAATTCCTACTACAGAGAGTT GAGAAGCAAGAAGGGAGTGCTGTCTTTTGATCAGGCGTTGGATAGTGATGGTTCTACGACCGGAATAGTGTCGACATTCGCGAGGAGCGAGATGGAGTTC AGGACGAGCTTTGCGGCGGCGATGGTGAAGATGGGGAACATCGTTGGAGGTGGCGACGGTGAGATCAGGAAGAATTGTAGAGTGTTTAATTAA
AA sequence Show only first row Show all	>Lus10001324 pacid=23146550 polypeptide=Lus10001324 locus=Lus10001324.g ID=Lus10001324.BGIv1.0 annot-version=v1.0 MVAKKMSVLIVGYVFFLCNAVAVSAGADGMKVGFYKSTCPEAETIVRKVVQKWYNNDRSIPAALLHLQFHDCFVNGCDASILIDSTAQNPSEKAAGPSQT VRGYDLLDAVKAELEAACPSRVSCADIVALATRDAVVLAGGPTYALPTGRLDGVVSKPSDVKLPGPTLNISQAFTQFFQPLGFTLAEMVTLLGAHTVGVA HCSSFRDRISDFKGTGRPDPSMDPNLVVSLRKTCSTTGSNKNNNTNPTAFLDQNTSFAVDNSYYRELRSKKGVLSFDQALDSDGSTTGIVSTFARSEMEF RTSFAAAMVKMGNIVGGGDGEIRKNCRVFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	0	1
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	3.2	0.9021
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	4.5	0.8915
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	5.5	0.8964
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	5.7	0.8925
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	7.1	0.9057
AT2G20920			Protein of unknown function (D...		Lus10024004 [exp]	9.7	0.8845
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10012284 [exp]	10.6	0.8886
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	11.0	0.8905
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	11.2	0.8957
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	11.6	0.8862

Compare expression of checked genes

Lus10001324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.