Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037803 [exp] 86 / 4e-22 ND / Lus10004372 [exp] 91 / 1e-21 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10000550 [exp] 71 / 1e-14 ND / Lus10011245 [exp] 0 / 1 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10018440 [exp] 0 / 1 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001326 pacid=23146558 polypeptide=Lus10001326 locus=Lus10001326.g ID=Lus10001326.BGIv1.0 annot-version=v1.0 ATGCATGCTCCTCCTACGACTATTGGATTGTTCACTGTCCAACTCAGGGTCGACTTGAATGATTTGGTGTCAACATGGTGCCCCGCGCTGACCGAGCTAA ATGTTTGTTGTTGTGAGAATGTGAATGATCTGGTGGGTGATGCTCCACAACTTGCGGATATGGAAATTGACTTGAAGTTCCAGTCAATCTGGTTTAGGAA AGCTCCGATTGTTGAGCGATTACAAGTTGACACCGAATCTCAACTTCGATTGCCCAGTACTGATGTGGCAGGTTCGATGTGTTGCTCGATGTTGGGAAAC ATCATCTCCTCAGTGCCAGGCGGCTTTGGAACAGGTTACCATCGGGTCCGAGTTATAGGAGGTTTCCAGATCCTCGATCCACCACCAATTTCTCAATCTG AAGGTCTGCCTCTCAAGCCCATATTCAATGGAAACCCGTATTTTCTGGATTCGGTATTGATTCTCTACTCTGTTTTCCCCAGTGTCGTTCAGTCGGTTAG ATCCGGGAGGGAAATTGGTAATGGAATTTAG
AA sequence Show only first row Show all	>Lus10001326 pacid=23146558 polypeptide=Lus10001326 locus=Lus10001326.g ID=Lus10001326.BGIv1.0 annot-version=v1.0 MHAPPTTIGLFTVQLRVDLNDLVSTWCPALTELNVCCCENVNDLVGDAPQLADMEIDLKFQSIWFRKAPIVERLQVDTESQLRLPSTDVAGSMCCSMLGN IISSVPGGFGTGYHRVRVIGGFQILDPPPISQSEGLPLKPIFNGNPYFLDSVLILYSVFPSVVQSVRSGREIGNGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001326 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	1.4	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	1.7	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	2.0	1.0000
					Lus10002413 [exp]	2.0	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	2.2	1.0000
					Lus10003843 [exp]	2.4	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	3.0	1.0000
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10022417 [exp]	3.3	1.0000
					Lus10022529 [exp]	3.5	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10022628 [exp]	3.6	1.0000

Compare expression of checked genes

Lus10001326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.