Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09670 484 / 1e-172 Oxidoreductase family protein (.1) AT1G34200 407 / 2e-142 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1) AT1G66130 276 / 1e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013633 [exp] 716 / 0 AT4G09670 486 / 4e-173 Oxidoreductase family protein (.1) Lus10005674 [exp] 471 / 5e-167 AT4G09670 437 / 9e-154 Oxidoreductase family protein (.1) Lus10002180 [exp] 236 / 4e-76 AT1G66130 239 / 3e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039898 [exp] 178 / 4e-54 AT1G66130 212 / 1e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10007490 [exp] 43 / 0.0002 AT4G17370 590 / 0.0 Oxidoreductase family protein (.1) Lus10020317 [exp] 0 / 1 AT4G09670 69 / 2e-24 Oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200200 [exp] 543 / 0 AT4G09670 521 / 0.0 Oxidoreductase family protein (.1) Potri.005G200300 [exp] 539 / 0 AT4G09670 522 / 0.0 Oxidoreductase family protein (.1) Potri.017G137300 [exp] 353 / 4e-121 AT1G66130 382 / 2e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10001327 pacid=23146552 polypeptide=Lus10001327 locus=Lus10001327.g ID=Lus10001327.BGIv1.0 annot-version=v1.0 ATGTCGTCGGAGCCAACCATCTCTTTCGGAATCCTCGGATGCGCCGACATAGCACGCAAGGTGTCCCGGGCAATCACTCTGTCCCCCAACGCCCGCATCG CCGCCATCGGAAGCCGGACACTGGACAAGGCCACAGCATTCGCCAAGGCCAACCACTTCCCTCCCGACGTCAAGGCGTACGGTTCCTACGAAGCTTTGCT CGACGACCCCGAAATCGACGCCGTTTATCTCCCGTTGCCCACTTCCCTCCACCTGAAATGGGCTACCCTTGCTGCCCACAAGAAGAAGCATATCCTTCTC GAGAAACCCGTCGCCGTCGACGTGGACGAACTTGACCAGATTCTGGCCGCCTGCGAGGCTAACGGCGTTCAGTTCATGGACGGCACCATGTGGGTCCACC ATCCCAGGTCTGCTAAGATGCTGGAGTTCTTGAATGACAGACAACGCTTTGGGGATCTCAGAACGATACACAGCTGTTTTACCTTTGCGGCTGGTGAGTC ATTCCTGAAAGACAACATACGAGTAAAGCCAGACCTTGATTCTCTTGGCGCCTTAGGGGATGCTGGGTGGTATGGTGTCAGAGCCATCCTCTTTGTAGCT GACTACGAGCTTCCAAGGAGAGTGGTGGCCACACGAGGTGCGGTTCTGAGCGAGCAAGGAGTACTTTTAGCGTGTGGAGGATCTCTGCATTGGGAAGATG GGAAAGTAGCAAACTTCCACTGCTCTTTCTTGACCCACATGACCATGTTTGTGACAGCAATTGGTACTTCAGGAACCTTGCAGCTGAATGATTTCATCAT CCCTTTTGAAGAAAAAGAGGCTTCCTTCACTACCTCTTCACAGGCAAGGTTCAACGATCAAGTGTCCGGATGGGAACCTGCTCCGACCCAGCACGTTGTG CTGGTGGATCTGCCGCAGGAGGTTTGCATGATCAACGAGTTTTCACGTTTGGTTACGAACATTAAGGTGAACTGCGCAAAGCCTGATCTGTCTTGGCCGT CTCGCAGCAGGAAGACGCAGCAGATCTTGAATGCCGTGAAAGAGTCAATTGAGAAAGGGTTTGAACCTGTTGAGATTGCCTAG
AA sequence Show only first row Show all	>Lus10001327 pacid=23146552 polypeptide=Lus10001327 locus=Lus10001327.g ID=Lus10001327.BGIv1.0 annot-version=v1.0 MSSEPTISFGILGCADIARKVSRAITLSPNARIAAIGSRTLDKATAFAKANHFPPDVKAYGSYEALLDDPEIDAVYLPLPTSLHLKWATLAAHKKKHILL EKPVAVDVDELDQILAACEANGVQFMDGTMWVHHPRSAKMLEFLNDRQRFGDLRTIHSCFTFAAGESFLKDNIRVKPDLDSLGALGDAGWYGVRAILFVA DYELPRRVVATRGAVLSEQGVLLACGGSLHWEDGKVANFHCSFLTHMTMFVTAIGTSGTLQLNDFIIPFEEKEASFTTSSQARFNDQVSGWEPAPTQHVV LVDLPQEVCMINEFSRLVTNIKVNCAKPDLSWPSRSRKTQQILNAVKESIEKGFEPVEIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	0	1
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	1.0	0.9149
AT4G33510		DHS2	3-deoxy-d-arabino-heptulosonat...		Lus10011022 [exp]	1.7	0.8690
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	4.7	0.8890
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	5.7	0.8645
AT1G11770			FAD-binding Berberine family p...		Lus10038440 [exp]	6.7	0.8439
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	6.7	0.8622
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	9.4	0.8584
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	9.5	0.8595
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	9.8	0.8601
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	10.4	0.8421

Compare expression of checked genes

Lus10001327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.