Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17840 138 / 3e-42 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT3G47650 40 / 0.0002 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT2G24860 38 / 0.0007 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013632 [exp] 261 / 1e-89 AT5G17840 111 / 9e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 43 / 2e-05 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040400 [exp] 183 / 1e-59 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066000 [exp] 179 / 3e-58 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G068300 [exp] 42 / 5e-05 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 40 / 0.0001 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.006G095400 [exp] 39 / 0.001 AT2G38000 531 / 0.0 chaperone protein dnaJ-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001328 pacid=23146567 polypeptide=Lus10001328 locus=Lus10001328.g ID=Lus10001328.BGIv1.0 annot-version=v1.0 ATGGAATCTACAGCCATTATCAGCTCTCGGTTAACTTTTCCAGTCGGCCCTTCGCCAATTTGCGATCAAACTTCCAAACGCGCGGTTTGTTTTGGTTATG AGCTCCGATTGTGCCGCGGAGGGTTCGCTACAAACAAAATCTCGGCCCTTCTTCCTAATGGTTCTGTTTCTTCCTCTGCTTCTCTCGGCTCAGATTCGAG GTCGGTGACGAATGCGCATAAGCGCAGAAGCAGCTTGGAGTCTCTCTTCTGCTACGACAAGCCGATACCGGAAGAGATCATAGATACCCCAGTTGGTGTA TCTTCATTAGCGGAGAAGGCAATCGGAGAGAATCTCAGATGTGCTGACTGCGAAGCCAAAGGTGCAGTCCGATGTACCACCTGCTCCGGCTCTGGCCTCT ACGTCGACTCCGTTATGGAGAGCCAAGGGATCATTGTTAAAGTCCGCTGCCTTGGTTGTGGGGGAGCAGGCAACATTATGTGCTCAGAGTGCGGTGGGAG GGGTCATCTTGGACCTAAATGA
AA sequence Show only first row Show all	>Lus10001328 pacid=23146567 polypeptide=Lus10001328 locus=Lus10001328.g ID=Lus10001328.BGIv1.0 annot-version=v1.0 MESTAIISSRLTFPVGPSPICDQTSKRAVCFGYELRLCRGGFATNKISALLPNGSVSSSASLGSDSRSVTNAHKRRSSLESLFCYDKPIPEEIIDTPVGV SSLAEKAIGENLRCADCEAKGAVRCTTCSGSGLYVDSVMESQGIIVKVRCLGCGGAGNIMCSECGGRGHLGPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10001328 [exp]	0	1
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	13.3	0.8843
AT5G62960			unknown protein		Lus10032130 [exp]	17.5	0.8380
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	19.6	0.8698
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10014292 [exp]	23.0	0.8593
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10014859 [exp]	24.0	0.8096
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	25.6	0.8787
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10030571 [exp]	28.1	0.8798
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10037856 [exp]	32.3	0.8753
					Lus10032317 [exp]	38.6	0.8105
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10037578 [exp]	39.9	0.8639

Compare expression of checked genes

Lus10001328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.