Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17850 476 / 2e-162 Sodium/calcium exchanger family protein (.1) AT5G17860 408 / 1e-135 CAX7 calcium exchanger 7 (.1) AT3G14070 356 / 7e-115 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G54115 238 / 7e-70 ATCCX4 cation calcium exchanger 4 (.1) AT1G08960 174 / 4e-47 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013634 [exp] 973 / 0 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10020318 [exp] 424 / 5e-141 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 416 / 2e-140 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10001330 [exp] 402 / 2e-133 AT5G17860 552 / 0.0 calcium exchanger 7 (.1) Lus10013635 [exp] 390 / 6e-129 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10015668 [exp] 226 / 7e-68 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10037681 [exp] 224 / 1e-64 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 226 / 7e-63 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10029938 [exp] 161 / 1e-41 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065900 [exp] 585 / 0 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 489 / 3e-168 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.013G065800 [exp] 388 / 5e-128 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 363 / 6e-118 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.003G066900 [exp] 206 / 3e-58 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 199 / 2e-55 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 174 / 2e-47 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10001329 pacid=23146559 polypeptide=Lus10001329 locus=Lus10001329.g ID=Lus10001329.BGIv1.0 annot-version=v1.0 ATGGCAAAATATTCCTTGTCTTCGTCCCAACGGAAAGGATGTCTGCTCTTCCTCAACGCTTCCTTTCTAATCACAACCACCATTTTCCTCACCGTTCATC ACTCTCATCGTCACCCTTCACAACCCATCGTTCTCGACTCTTTCAAAAAACCCTCCTCCTCCACCGCTGAAATCCTCGACTGCCACGCTTTCCAAGATCT CCCCGACGCGGAAGCTAAGTGCCGCTCCCTCAATTCCAGAAACCCTTGCGTCACTCAAGGCTATATCAATTACCTCCGCCTATTCTACTGCAATTTCGCC CAACAAGCTCCCTTTGCCGGTCATCTCCTTCTTCTTCTCTGGCTCCTCGTCCTCTTCTATCTGCTGGGGAACACCGCCTCCGACTACTTCTGCTCCTCGC TCGAGGATTTATCCAGGCTGCTGAAACTTTCCCCGACGATCGCCGGTGTCACTCTGCTGTCGCTGGGGAACGGAGCTCCCGATGTGTTCGCCAGCATAGT CTCCTTCGGCGGGAGTGGGACCCGGGACATCGGGTTCAACACCATGGTAGGTGGGGCTTCTTTCGTTACCTGTGTTGTGGTGGGAACAATAAGTTTTTTA GTTGAGCACAGGAGGGTTAGGGTTAGTCAAGCAGCCTTCGTCAGGGACGTTTGCTTCTTTCTGTTGGTTCTTGGCTCGTTGATTATGACCGTACTTCTTG GGGAAGTTCATCTCTGGGGCGCAATTGGGTACTTGATGATGTATGTCGCTTATGTGATTGTTGTCTACATTTGGACTAATGGTGGTGGTGATGTTAATAG TCCTAGTTCAAGCTGCGAGAGTGGATTGAGCATACCCATATTGATGAACAAGGAGGAAGCTGGTGAATTGGATCAGCGGAGGAATTTCAATGCCAGAAGA TCTGATCCTTGTAGTTTGATGATTTACATAGCTGGGATGCCACTCTACTTGCCGCGAAGACTAACGATCCCTGTCGTTTCGGAAAAAGACTGGTCCAAGC CATTGGCGATCGCATCGGTCGTACTGGCACCGATTCTGCTATCAACACTTTGGATTGCTCAATATGCCAGTCCCAGTATCAAAACCTTGGTCATAGTTTA TGGAATTGGGTGCCTGGCTGGAGCACCACTAGGCATAGTTGCATATCTAACGACAGAGGAATTAACCCCTCCGGGGAAGAAATGGTTGCTTCCCTGGCTG GCTGGTGGTTTCCTGATGAGTGTGACATGGAGTTACATAACAGCTCAGGAATTGGTAGCGTTGTTAGTTTCAATGGGTTACATATTTGGGATCAGCCCTT CAATACTGGGGCTAACAGTGCTCGCATGGGGCAACTCCCTCTCTGATCTCATTACCAATTCGACAATGGCGATCAACGGTGGTCCTGAAGGTGTGCAAGT AGCAATATCAGGGTGTTATGCAGGACCGGTGTTCAACATCCTGTTTGGACTGGGATTGTCGCTGGTTGGTTCTTGTTGGGAATCGTATCCGGATCCGGTG TCGATATCCTCGGACCCGTATCTTCTGGAGACGCTGGGGTTTCTGTTTGCTGGGTTGATGTGGGGGTTGGTTGTATTGCCCAGAAGAAGAATGAAGCTTG ATGGTGTACTGGGAGGAGGTCTCTTGGTTATTTATCTAATGTCTGTGTCTTTGAGGCTTCTACAGACTTCAGGGTCCCTTCAATTGTATCCCAACAACTT GTCCGCTAGGTGGTTTGCTATGGACCTGGCTCCTATAAATTGCCCATACAGGCTAAGTTGGGAGTTGATTGAAGCAAGGGGTAGGGCGGTGACAGAATAT AATTTTGGTAGCAAGTTTGAGGAGATGATGTAA
AA sequence Show only first row Show all	>Lus10001329 pacid=23146559 polypeptide=Lus10001329 locus=Lus10001329.g ID=Lus10001329.BGIv1.0 annot-version=v1.0 MAKYSLSSSQRKGCLLFLNASFLITTTIFLTVHHSHRHPSQPIVLDSFKKPSSSTAEILDCHAFQDLPDAEAKCRSLNSRNPCVTQGYINYLRLFYCNFA QQAPFAGHLLLLLWLLVLFYLLGNTASDYFCSSLEDLSRLLKLSPTIAGVTLLSLGNGAPDVFASIVSFGGSGTRDIGFNTMVGGASFVTCVVVGTISFL VEHRRVRVSQAAFVRDVCFFLLVLGSLIMTVLLGEVHLWGAIGYLMMYVAYVIVVYIWTNGGGDVNSPSSSCESGLSIPILMNKEEAGELDQRRNFNARR SDPCSLMIYIAGMPLYLPRRLTIPVVSEKDWSKPLAIASVVLAPILLSTLWIAQYASPSIKTLVIVYGIGCLAGAPLGIVAYLTTEELTPPGKKWLLPWL AGGFLMSVTWSYITAQELVALLVSMGYIFGISPSILGLTVLAWGNSLSDLITNSTMAINGGPEGVQVAISGCYAGPVFNILFGLGLSLVGSCWESYPDPV SISSDPYLLETLGFLFAGLMWGLVVLPRRRMKLDGVLGGGLLVIYLMSVSLRLLQTSGSLQLYPNNLSARWFAMDLAPINCPYRLSWELIEARGRAVTEY NFGSKFEEMM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17850			Sodium/calcium exchanger famil...		Lus10001329 [exp]	0	1
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	9.3	0.7121
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	15.0	0.6852
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	27.8	0.6519
AT2G02148			unknown protein		Lus10035090 [exp]	40.8	0.6284
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	45.2	0.6185
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	49.5	0.6036
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	55.6	0.6168
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10041493 [exp]	58.5	0.5521
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	71.5	0.5715
AT3G26750			unknown protein		Lus10021459 [exp]	102.0	0.5734

Compare expression of checked genes

Lus10001329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.