Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17860 460 / 1e-156 CAX7 calcium exchanger 7 (.1) AT5G17850 375 / 6e-124 Sodium/calcium exchanger family protein (.1) AT1G54115 375 / 1e-122 ATCCX4 cation calcium exchanger 4 (.1) AT3G14070 364 / 2e-118 ATCCX3, CAX9 CATION CALCIUM EXCHANGER 3, cation exchanger 9 (.1) AT1G08960 165 / 3e-44 CCX5, AtCXX5, ATCAX11, CAX11 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013635 [exp] 823 / 0 AT5G17860 540 / 0.0 calcium exchanger 7 (.1) Lus10013634 [exp] 379 / 3e-125 AT5G17850 512 / 4e-177 Sodium/calcium exchanger family protein (.1) Lus10001329 [exp] 371 / 2e-121 AT5G17850 505 / 8e-174 Sodium/calcium exchanger family protein (.1) Lus10037681 [exp] 351 / 2e-113 AT1G54115 763 / 0.0 cation calcium exchanger 4 (.1) Lus10037682 [exp] 348 / 2e-105 AT1G54115 758 / 0.0 cation calcium exchanger 4 (.1) Lus10015668 [exp] 275 / 3e-87 AT1G54115 484 / 8e-168 cation calcium exchanger 4 (.1) Lus10020318 [exp] 265 / 2e-80 AT5G17850 464 / 2e-157 Sodium/calcium exchanger family protein (.1) Lus10005673 [exp] 256 / 1e-78 AT5G17850 346 / 7e-114 Sodium/calcium exchanger family protein (.1) Lus10029938 [exp] 154 / 3e-39 AT1G08960 640 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065800 [exp] 533 / 0 AT5G17860 420 / 9e-141 calcium exchanger 7 (.1) Potri.019G040200 [exp] 510 / 3e-176 AT5G17860 449 / 2e-152 calcium exchanger 7 (.1) Potri.013G065900 [exp] 424 / 1e-142 AT5G17850 508 / 1e-175 Sodium/calcium exchanger family protein (.1) Potri.019G040301 [exp] 348 / 1e-113 AT5G17850 393 / 2e-131 Sodium/calcium exchanger family protein (.1) Potri.003G066900 [exp] 344 / 1e-110 AT1G54115 802 / 0.0 cation calcium exchanger 4 (.1) Potri.001G167200 [exp] 320 / 1e-101 AT1G54115 811 / 0.0 cation calcium exchanger 4 (.1) Potri.013G025100 [exp] 163 / 1e-43 AT1G08960 603 / 0.0 cation calcium exchanger 5, Arabidopsis thaliana cation calcium exchanger 5, cation exchanger 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10001330 pacid=23146565 polypeptide=Lus10001330 locus=Lus10001330.g ID=Lus10001330.BGIv1.0 annot-version=v1.0 ATGGAAAGTTCCTGTTCCATTTTCCACTGCAAGAAGAAGCTCATTCTCTTCCTCCTCAACATTTCCTTCATTCTTCTCCTGACACTCTTCCTCGCAACTT CAAATCGTATTCCACCTCCCGAACTCGAACACAAACTTTCGGGCATAACCAATGGCACTACCTGCAGTGAACTTCACAACTACACAGATTACAAGATCAA GTGCCTCTATGTCAAGTCTCATTGCAGCTCCAAAGGGTACATAAACTATCTCAAAATATACTACTGCACTTTAGGCCATTCCCCACCACTTGCCTACGCT GCCTTACTCCTATGGCTCTCCATTCTCTTCTACCTTTTGGGTAACACAGCTGCAGAATACTTCTGTTCTTCCCTGGAGAGCTTGTCTAGCCTCCTGAAAC TCTCTCCAACCATTGCCGGTGTCACTCTTCTCTCCCTAGGCAACGGAGCCCCCGATGTTTTCTCCAGCATCGTCTCCTTCACGAGATCTAACAACGGTGA TGTCGGCCTCAACAGTGTTCTGGGAGGTGCATTCGTTGTGTCGAATGTTGTGGTCGGTATCATCAGCATTTTAATCACTAGTCATCATCATGAAGTTTCA ATTGACAAGCCTAGCTTCATTCGAGACGTTTCCTTCTTCATTTTCGCCCTCGTTTCACTACTATTGATTCTCCTAGTAGGAGAAATCAAGCTGTGGGGTG CCTTGCTTTTCCTTTCCATATACTTTCTCTATGTCTCTGTAGTTTGTTTCATGCATTACTTGCACAGCAAGAAACATAACCACAATGTGAGCCAGCTGTC AAAACCTTCTGATCATTCTCTTGAGATGGGGATCCCACTTCTAGGCTATATTAATGACAGTGAAGTCCCGACATTTTCGACGAAAGCTAGCATCCAGGGC AAAGAAAGTTCGAATCTTCGCAAAGTTGTGCACATTCTTGAGCTGCCACTGTATCTTCCAAGGAGGTTGACCATACCAGTTGTCAACGAGGAGAAATGGT CAAAGCCATTTGCAGTTGCTTCAGCCTCACTAGCTCCAATCCTGTTGACAGCATTGTTCAACACACAGTGGCAGAAGAAATCAGGGTCAAGCGGAAACAA TCACCTAGGGAGCTATTTGGCAGCAGGGTTGGAAGGAATGGTGTTAGGGAATCTAGCATTTGTGAACACAAAGAGTTGCAGCCCACCCCAGAAATGGCTG CTCCTCTGGCTAGCCGGGGGTTTCATAATGAGCGTGACGTGGACATACATCATTGCAGAGGAGTTGGTTTCTCTACTGGTGTCAATCGGTCAAATACTCG GGATTGACCCGTCGGTTTTGGGACTTACCTTGCTAGCTTGGGGGAATTCGCTTGGGGATTTGATAACAAATGTGGCAATGGCGGTGAATGGCGGGGCAGA TGGGGCACAGGTCGCGATATCGGGGTGCTACGCTGGGCCCATGTTCAATACTCTGTTGGGTTTGGGGATATCGTTTATTGTCTCGTCTTGGAAGGCTTAT CCTTCGAGTTATCTGATTCCGGGAGATGATTCTCTTTATGAGACTCTAGGGTTCTTGATGGCTGGGTTAGTCTGGGCTCTGCTGGTTCTTCCTGTGAGGA ATATGAAATTGGATAGGTTTCTTGGAGTGGGGCTTTTGTGTACATACTTGTGCTTCTTGGTGTTGAGGCTTGGTAGAGCTGTTGGTTGGTGGTTTTGGTC TTAA
AA sequence Show only first row Show all	>Lus10001330 pacid=23146565 polypeptide=Lus10001330 locus=Lus10001330.g ID=Lus10001330.BGIv1.0 annot-version=v1.0 MESSCSIFHCKKKLILFLLNISFILLLTLFLATSNRIPPPELEHKLSGITNGTTCSELHNYTDYKIKCLYVKSHCSSKGYINYLKIYYCTLGHSPPLAYA ALLLWLSILFYLLGNTAAEYFCSSLESLSSLLKLSPTIAGVTLLSLGNGAPDVFSSIVSFTRSNNGDVGLNSVLGGAFVVSNVVVGIISILITSHHHEVS IDKPSFIRDVSFFIFALVSLLLILLVGEIKLWGALLFLSIYFLYVSVVCFMHYLHSKKHNHNVSQLSKPSDHSLEMGIPLLGYINDSEVPTFSTKASIQG KESSNLRKVVHILELPLYLPRRLTIPVVNEEKWSKPFAVASASLAPILLTALFNTQWQKKSGSSGNNHLGSYLAAGLEGMVLGNLAFVNTKSCSPPQKWL LLWLAGGFIMSVTWTYIIAEELVSLLVSIGQILGIDPSVLGLTLLAWGNSLGDLITNVAMAVNGGADGAQVAISGCYAGPMFNTLLGLGISFIVSSWKAY PSSYLIPGDDSLYETLGFLMAGLVWALLVLPVRNMKLDRFLGVGLLCTYLCFLVLRLGRAVGWWFWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17860		CAX7	calcium exchanger 7 (.1)		Lus10001330 [exp]	0	1
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032498 [exp]	2.6	0.8333
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10013532 [exp]	6.3	0.8573
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	10.7	0.8435
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	12.6	0.8428
					Lus10042963 [exp]	12.8	0.8475
					Lus10043242 [exp]	14.9	0.7701
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	16.4	0.8370
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	17.9	0.8282
					Lus10024104 [exp]	20.0	0.8385
					Lus10022993 [exp]	21.2	0.8178

Compare expression of checked genes

Lus10001330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.