Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03710 160 / 2e-45 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT2G47220 151 / 1e-43 ATDUF5 DOMAIN OF UNKNOWN FUNCTION 724 5 (.1) AT5G14580 55 / 7e-09 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013636 [exp] 301 / 1e-96 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 47 / 3e-06 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10022250 [exp] 45 / 2e-05 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040100 [exp] 186 / 2e-54 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 180 / 2e-52 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.001G347900 [exp] 53 / 3e-08 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Lus10001331 pacid=23146554 polypeptide=Lus10001331 locus=Lus10001331.g ID=Lus10001331.BGIv1.0 annot-version=v1.0 ATGCTATCAAATCCTGGCCGCGGCGTTCTTCATGGGAAGACTTATCACCCCCGCAGCTCGCCGTTTCAGCTTTCCAGTAGCCACCGCTGTGGCAAGCTCT CCGTCTCTCCAACTTGCTCTCGTTGCATTGGTTCAAGGAAATCAAGCTTCTCTTCTTTGTCTCTGCTTTTCCCCCGGAAAAAATCAACCGAAAGCTTCGC TCGCCTAAGAGCCTCCTTTGAAGACCACGAAATTCCGGACTCAGTAGCTGGGGATGGACCATCGCAGTTCTTTCCTCAATATGTTTCTGTTAAAATTCCC TACGGGGACAGGGAGATCTTGGTTGAAACGGGTCATATTGGTAGACAAGCTAGTGGTTCTGTTATGGTCACTGATGGAGAAACTGTTGTCTATACATCTG TTTGTTTGGATGATAATCCAAGCGAGCCTTCAGACTTTTTCCCTATGTCTGTACATTATCAAGAACGTTTTTCTGCTGCAGGTCGAACAAGTGGGGGGTT TTTCAAACGAGAGGGAAGAGCAAAAGATCATGAGGCTGAACTAACAAAGCTACATATAGGATTAAGCTTACACTACACTATCCTATTAGGTACCGATTCC CTTTAA
AA sequence Show only first row Show all	>Lus10001331 pacid=23146554 polypeptide=Lus10001331 locus=Lus10001331.g ID=Lus10001331.BGIv1.0 annot-version=v1.0 MLSNPGRGVLHGKTYHPRSSPFQLSSSHRCGKLSVSPTCSRCIGSRKSSFSSLSLLFPRKKSTESFARLRASFEDHEIPDSVAGDGPSQFFPQYVSVKIP YGDREILVETGHIGRQASGSVMVTDGETVVYTSVCLDDNPSEPSDFFPMSVHYQERFSAAGRTSGGFFKREGRAKDHEAELTKLHIGLSLHYTILLGTDS L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	0	1
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	1.4	0.9701
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	1.4	0.9687
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10030787 [exp]	2.0	0.9512
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	3.5	0.9588
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	3.7	0.9360
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	4.9	0.9356
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035588 [exp]	4.9	0.9313
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	5.2	0.9351
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	5.9	0.9500
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	6.5	0.9403

Compare expression of checked genes

Lus10001331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.