Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03710 902 / 0 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT5G14580 353 / 7e-109 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G61620 53 / 2e-07 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT3G46210 52 / 6e-07 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT4G29060 46 / 7e-05 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013636 [exp] 1255 / 0 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 345 / 2e-106 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10022250 [exp] 342 / 6e-105 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10043229 [exp] 51 / 4e-06 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 50 / 5e-06 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10009221 [exp] 49 / 5e-06 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10029327 [exp] 45 / 0.0003 AT3G11964 2127 / 0.0 RNA binding;RNA binding (.1) Lus10016216 [exp] 45 / 0.0003 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1) Lus10037991 [exp] 43 / 0.0004 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065700 [exp] 969 / 0 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 964 / 0 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.001G347900 [exp] 291 / 5e-86 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G094300 [exp] 66 / 9e-12 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G043600 [exp] 51 / 8e-07 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.018G083900 [exp] 52 / 2e-06 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.014G148500 [exp] 45 / 0.0001 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03726 [flax] [poplar] PNPase Polyribonucleotide nucleotidyltransferase, RNA binding domain CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0021 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2 CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10001332 pacid=23146557 polypeptide=Lus10001332 locus=Lus10001332.g ID=Lus10001332.BGIv1.0 annot-version=v1.0 ATGCCACAGGTGTTGAGCTATGATAGTTTGCACCCACCTGATATATTGGCAGTCACAGCTGCTGGAATAGCAGTATGTCTATCAGAGGTGCCAAATACAA AACCTATTGCAGGAGTTCGAATTGGTCTCGTTGACGATAAGTTTATTGTCAATCCCACAAATAAAGAGATGGAGAAGTCGGTGCTAGATTTAGTGATGGC TGGTACAGATAGCGCAATATTAATGATTGAGGGGTACTGTGATTTTCTGACAGAGGAAAAGTTGGTTGAAGCAGTAAAAATTGGTCAGGATGCAGTACGT TTGATTTGCAACGAAGTGCGGGCTTTGGTGGAGAGGTGTGGAAAACCAAAAATGATCGATGCTATAAAGTTGCCTCCTCTTGAGCTATATAAACATGTCG AGGAAATGGCTGGTGATGAATTAGCCAAAGTGCTACAGATTAGGAACAAAATACCAAGAAGAAAGGCCATTTCAGCTTTGGAGAAAAAAGTAACTGATAT ACTTACAGAGGAAGGCTATGTTGCTAAGGGGTTAGATTCAGGAGCTACTGAACCAACATTAGACTTGCTTGAAGAGGAAGATGATGATGAAGAGGTTATT GTGGACGGTGAAGTAGATGAAGGTGATGTCCACATAAAGCTAGTCCCAAAAGAACCTCCTCCTAAGTTGTTCTTGGAGCGTGATGTAAAGCTTGTATTCA AAGAGGTTTCATCAAAACTCTTGCGCCAGCGGATCGTGCAGGGTGGGAAAAGGAGCGATGGGCGAACCCCAACCGGAATACGTCCAATAGATTCAAGATG TAGCTTACTACCCAGAGCACATGGTAGCTCTCTTTTCACCCGTGGAGAAACACAGGCCTTGGCTGTGGCTACTCTTGGTGATCATCAAATGGCTCAAAGA GTTGACAACCTTGTGGACGAAGAGGAATTTAAGAGGTTTTATCTTCAGTATTCATTTCCTCCATCATCTGTCGGGGAGGCAGGTCGAATGGGAGGCCCCA ATAGACGAGAGATTGGTCATGGTATGCTTGCAGAGAGAGCTCTTGAACGTATATTGCCTCCTGAAGACATTTTTCCATACACTATACGAGTTGAGAGTAC TATTACCGAGAGCAATGGTTCCTCAAGCATGGCTTCCGTATGTGGAGGTTGTTTGGCATTACAAGATGCGGGTGTTCCTGTAAAATGCTCCATTGCAGGA ATTGCAATGGGTATGGTCTTTGACACTAAAGAATTTGGAGGTGATGGAACACCGCTTATTCTTTCTGACATCACTGGAGCTGAAGATGCTTCTGGAGATA TGGACTTCAAGGTTGCTGGAAACGAGGATGGAATTACTGCATTTCAGATGGACATAAAGGTTGCAGGAATCACTTTACCAGTTATGAGAGATGCATTATT ACAGGCTAGGGACGGAAGGAAGCATATTCTTGCTGAAATGTCGAAGTGTTTGCCACCCCCTTCTAAAAAGCTGTCCAAGTATGCACCACTCATATACATT ATGAAGGTGGACCCGCAAAAGGTTAACTTACTCATTGGTCCGGGTGGAAAGAAGGTTAGGAGTATTATCGAAGAAAGTGGTGTGGAGGGCATTGACACAC AAGATGATGGAATTATAAGGATCACTTCGAAGGATTTATTAAGTATAGAGAAATCAAAAGCCATCATCTCTAGACTTTTAAAGGTTCCAACTGTCGGTGA TATATATAGGAACTGTGAGATCAAATCAATAGCTCCGTATGGTGTCTTTGTTGAAATAGGCCCCGGTCGTGAGGGACTTTGCCATATTAGTGAACTTACT GCTTCTTATCTGGCGAAGGCAGAAGATATTTTTAAGGTTGGAGACAAGGTGGATGTTAAGCTTATCGAGGTAAATGACAAGGGACAGCTCCGCCTTAGCC GCAAAGCTTTACTCCCTGAACAAGCTCCAGCGAGTAATGCAAAAACCATAAACACCCCAAAAGGAAAGACATCGGAAGATGCTTCTTCTCTTGTGCAAAA GAAGAAAAAGTCAGGCAGCTCTACCAAAGATGTAACCGTCATTAAAGACCCGCCTAAGAAGAGTTCGACTGGAAAAGACAGTTTAGTAAACGGAGAGGCT GCCATGGGATAG
AA sequence Show only first row Show all	>Lus10001332 pacid=23146557 polypeptide=Lus10001332 locus=Lus10001332.g ID=Lus10001332.BGIv1.0 annot-version=v1.0 MPQVLSYDSLHPPDILAVTAAGIAVCLSEVPNTKPIAGVRIGLVDDKFIVNPTNKEMEKSVLDLVMAGTDSAILMIEGYCDFLTEEKLVEAVKIGQDAVR LICNEVRALVERCGKPKMIDAIKLPPLELYKHVEEMAGDELAKVLQIRNKIPRRKAISALEKKVTDILTEEGYVAKGLDSGATEPTLDLLEEEDDDEEVI VDGEVDEGDVHIKLVPKEPPPKLFLERDVKLVFKEVSSKLLRQRIVQGGKRSDGRTPTGIRPIDSRCSLLPRAHGSSLFTRGETQALAVATLGDHQMAQR VDNLVDEEEFKRFYLQYSFPPSSVGEAGRMGGPNRREIGHGMLAERALERILPPEDIFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAG IAMGMVFDTKEFGGDGTPLILSDITGAEDASGDMDFKVAGNEDGITAFQMDIKVAGITLPVMRDALLQARDGRKHILAEMSKCLPPPSKKLSKYAPLIYI MKVDPQKVNLLIGPGGKKVRSIIEESGVEGIDTQDDGIIRITSKDLLSIEKSKAIISRLLKVPTVGDIYRNCEIKSIAPYGVFVEIGPGREGLCHISELT ASYLAKAEDIFKVGDKVDVKLIEVNDKGQLRLSRKALLPEQAPASNAKTINTPKGKTSEDASSLVQKKKKSGSSTKDVTVIKDPPKKSSTGKDSLVNGEA AMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	0	1
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10013636 [exp]	1.0	0.9880
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	2.4	0.9673
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	3.0	0.9667
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	3.2	0.9463
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	3.5	0.9588
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	5.3	0.9262
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	7.5	0.9391
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	7.5	0.9370
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	7.7	0.9255
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10010317 [exp]	8.9	0.9254

Compare expression of checked genes

Lus10001332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.