Plant FIBer expression Database

Lus10001333 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37480 94 / 2e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013637
[exp]
259 / 1e-88 AT5G37480 117 / 4e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G065200
[exp]
141 / 6e-43 AT5G37480 113 / 2e-32 unknown protein
PFAM info
Representative CDS sequence
>Lus10001333 pacid=23146555 polypeptide=Lus10001333 locus=Lus10001333.g ID=Lus10001333.BGIv1.0 annot-version=v1.0
ATGGCGGAAGAAGCTTCAAAACCCGAATCCACTCACCAGCCTCCTCCTCCTCCTCCATTTGTAGAGGTAGAATGCAAAATATCGAAGAGAAAGAGACGGT
TTGCTGCGGGTACCAAGGCAGGATTCGCAGTATCTCTGATAAACAGGAAGTTGGATAGTGGTCGGCACCCTCCTCTACCTCTAGCTTTCGCTATTGAATC
TGTCAAAGACGGGGAGGAACCCGTCAGCTTTGGCCCAGATGCCCCTCTCGTTCACTATGGCAATGCCTGGAACTTGCAGGCGGTCACTGAATTGGATTAT
CCTCTTCCTCCTCCACCTGGTGGGGAAAATTTGAAAGTTCCACCGACTGCCATGCCTGAAAACCCTTCTACCACTGCGGATGAGGATTCTTATGGCTCAC
ATCCTGGAAGAAGGAGAAGAGCAGCAAAGCCTGCAGGAATCAGCAGAGTGTACATTGCCAAGATACTGCTCGCCTTCTTTCTGATATTTGTGCTGGGCTC
AGCTTTCACAATTGCTCTGGAAAATCTTCCTAAGTTGATACTGCTCCTCAACTCCTTCATGTAA
AA sequence
>Lus10001333 pacid=23146555 polypeptide=Lus10001333 locus=Lus10001333.g ID=Lus10001333.BGIv1.0 annot-version=v1.0
MAEEASKPESTHQPPPPPPFVEVECKISKRKRRFAAGTKAGFAVSLINRKLDSGRHPPLPLAFAIESVKDGEEPVSFGPDAPLVHYGNAWNLQAVTELDY
PLPPPPGGENLKVPPTAMPENPSTTADEDSYGSHPGRRRRAAKPAGISRVYIAKILLAFFLIFVLGSAFTIALENLPKLILLLNSFM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G37480 unknown protein Lus10001333
[exp]
0 1
AT1G23440 Peptidase C15, pyroglutamyl pe... Lus10029137
[exp]
6.2 0.9132
AT2G38300 GARP myb-like HTH transcriptional r... Lus10012239
[exp]
11.1 0.9103
AT2G46370 FIN219, JAR1 JASMONATE RESISTANT 1, FAR-RED... Lus10003039
[exp]
12.7 0.9091
AT5G05070 DHHC-type zinc finger family p... Lus10035395
[exp]
17.2 0.8525
AT1G63380 NAD(P)-binding Rossmann-fold s... Lus10007038
[exp]
19.4 0.9057
AT5G01470 S-adenosyl-L-methionine-depend... Lus10002489
[exp]
21.2 0.8608
AT2G30070 ATKUP1, ATKT1P,... POTASSIUM UPTAKE TRANSPORTER 1... Lus10029172
[exp]
21.3 0.8833
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Lus10029252
[exp]
21.6 0.9030
AT3G01980 NAD(P)-binding Rossmann-fold s... Lus10012548
[exp]
23.6 0.8926
AT1G75420 UDP-Glycosyltransferase superf... Lus10028338
[exp]
24.7 0.8688

Lus10001333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.