Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43030 338 / 2e-117 Ribosomal protein L3 family protein (.1) AT3G17465 115 / 7e-30 RPL3P ribosomal protein L3 plastid (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013640 [exp] 432 / 3e-154 AT2G43030 365 / 6e-128 Ribosomal protein L3 family protein (.1) Lus10017709 [exp] 135 / 1e-37 AT3G17465 450 / 2e-160 ribosomal protein L3 plastid (.1) Lus10033666 [exp] 135 / 1e-37 AT3G17465 455 / 2e-162 ribosomal protein L3 plastid (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070100 [exp] 388 / 4e-137 AT2G43030 369 / 7e-130 Ribosomal protein L3 family protein (.1) Potri.010G002300 [exp] 141 / 8e-40 AT3G17465 484 / 8e-174 ribosomal protein L3 plastid (.1) Potri.008G207000 [exp] 139 / 3e-39 AT3G17465 478 / 1e-171 ribosomal protein L3 plastid (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF00297 [flax] [poplar] Ribosomal_L3 Ribosomal protein L3
Representative CDS sequence Show only first row Show all	>Lus10001337 pacid=23146564 polypeptide=Lus10001337 locus=Lus10001337.g ID=Lus10001337.BGIv1.0 annot-version=v1.0 ATGCCAATTTCAGCTCTAACACCTCTCAACCATGGTGCCTGCCGCTACAGCCCATCATCCTCGCTGCTTAAATCAAAAGCAGCCGCCTCTCCTCCTTCAT CCATCTCCTTCAATTCCAATTTCATCCCCAAAACCACAACCTGCTCGTCGTCAAGGAACAAGAGATTGGGGATTTCCATTGTGGCAATGAGCTTCGACGC CGGCGTGGGAGTGATGGGCACCAAGCTCGGAATGATGACCTACTTCGAGCCCAACGGCGTTGTGGTTCCGGTCACGGTTGTCGGGTTCCGGGAAGGCAAC ATTGTTACCCAGATTAAGACTCAGGCCACCGAGGGTTACGATGCTGTTCAGATTGGTTATCGCAGGGTTAGGGATAGGAAGCTGACCAAGCCTGAGATGG GTCATTTGGAGAAGGCTGGAGTTATCCCCATGAGGCATTTGCAGGAGTTTAGGCTCCAGACGGTTGATGGTTTTGAGGTTGGCCAGAAGTTGACTTTTGA GGAGCTTTTTCAAGAAGGCGACTTTGTTGATGTCTCTGGTACCACTATTGGCAAAGGGTTTCAAGGTGGTATCAAGAGGCACAACTTCAAGAGAGGACTG ATGACTCACGGGTCCAAGAGCCACAGACAACTGGGATCAATTGGTGCCGGAACTACGCCAGGGCGAGTGTACAAAGGGAAGAAGATGCCCGGGAGGATGG GAGGAACCAAGACCAAGATAAGAAAGCTCAAGGTAGTGAAAGTGGACAATGATCTCAAGGTGGTGATGATCAAAGGTGCTCTCCCGGGAAAGCCTGGCAA TCTTCTGCGCATAGCTCCTGCTAAAATCGTTGGCAAGAACATACCCAAGAACTAA
AA sequence Show only first row Show all	>Lus10001337 pacid=23146564 polypeptide=Lus10001337 locus=Lus10001337.g ID=Lus10001337.BGIv1.0 annot-version=v1.0 MPISALTPLNHGACRYSPSSSLLKSKAAASPPSSISFNSNFIPKTTTCSSSRNKRLGISIVAMSFDAGVGVMGTKLGMMTYFEPNGVVVPVTVVGFREGN IVTQIKTQATEGYDAVQIGYRRVRDRKLTKPEMGHLEKAGVIPMRHLQEFRLQTVDGFEVGQKLTFEELFQEGDFVDVSGTTIGKGFQGGIKRHNFKRGL MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKVVKVDNDLKVVMIKGALPGKPGNLLRIAPAKIVGKNIPKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	0	1
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	1.0	0.9901
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	2.8	0.9748
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	2.8	0.9662
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10013168 [exp]	3.7	0.9594
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	4.2	0.9731
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10005668 [exp]	6.0	0.9572
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	7.4	0.9632
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	7.4	0.9536
AT3G12110		ACT11	actin-11 (.1)		Lus10001693 [exp]	8.1	0.9442
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	9.5	0.9605

Compare expression of checked genes

Lus10001337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.