Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17690 121 / 8e-30 AtLHP1, LHP1, TFL2 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013641 [exp] 544 / 0 AT5G17690 253 / 6e-80 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10005669 [exp] 259 / 3e-82 AT5G17690 237 / 5e-74 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Lus10020324 [exp] 257 / 6e-81 AT5G17690 223 / 3e-68 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070400 [exp] 246 / 2e-76 AT5G17690 259 / 4e-82 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1) Potri.019G044400 [exp] 231 / 8e-70 AT5G17690 268 / 2e-84 TERMINAL FLOWER 2, LIKE HETEROCHROMATIN PROTEIN 1, like heterochromatin protein (LHP1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10001338 pacid=23146553 polypeptide=Lus10001338 locus=Lus10001338.g ID=Lus10001338.BGIv1.0 annot-version=v1.0 ATGAATGCCAAGCGGAAAGCATCTCCCACTGCAATTCCGCTACCACCAAATGGCGCTGCTACCGCTGAAGGCGATCATGATCATGCTGCTGTTAGCGACG GATTGGAACCTGCTACCTATGCTACTGAGACTGCAGCAATTCGCGATGGGAATCAAGTTAGTCAGAGGAAATGCGAGGATGTTCGAAATGATGGAGATGG TTTAGATGAAGTTGATGATGATGTAGACGCAAATGAAGAAGAAGATCAAGAAGAAGAAGAAGCAGACGCAGCAGCTGAAGATGAGCGCCCCAAGCTCGAT GAGGGTTTCTTTGAAATCGAGTCAATTCGGCGTAAGCGAGTTCGCAAGGGACAGCTTCAGTATCTCATTAAATGGCGAGGCTGGCCAGAAACTGCTAATA CGTGGGAACCTCTAGAAAATTTGCAGTCATGTTCTGATGTTATTGACGCTTTTGAGGAGAGTTTGCTATCTGGAAAATCTTCCTGGAAACGGAAACGCAA GTGGGGTGTCTCTAATTCGTACAACAAAAAGAAGCAGCCACATACTTCTTCCTGGAACAAAGTCACAGGTGATGATGACAGAAGAAGTCTACCTTCCACT TCTCTGAATACATCAAGCCTTGCTAGTCTTCCTGCATATACTAAAGAAGAGGATAACAATGAATATGATCCTAAGCTCCGTGAGCTGAGAGGATCAAGAC CTTCTGACAATGCAGATGCAGATAAGGTTGCTGTACAGTCAGATGCCAAGTCTCCAGCAGTTGAATATGGACTTCTCAAGGTTGATTCGGTAGATACTGC TCAGAACAACCATCAAATAGGTGCTAAAAGAAGAAAGTCTGCTTCTGTGAAGAGATTTAGAAAAGATCAAGCTTCTTGTGAGCCTAGGGATATTTCGTTA CCTAAGTTTTCTCTCAGCAGTGGTACATCTGCACAGCTAAGGACTGAAGCTTTTAGTTTAACAGGCTGTGGTTCTGGTTACAAGGCTGAATCTCCTATCA TCAAGATTCTCAAACCTGTCAGCTTTTCAAATTCTTCATCTGACAACATTCAAGATGTGCTTGTAACTTTTGTTGCTTTAAGGTCTGATGGCAAGGAAAT ACTTGTGGATAACAAATTTTTGAAGGCTCATAATCCTCTCCTGATTGTCATTCCAGCTGCAACAAACATCGCTGCTTTTACAGTGAATTTAGCAACAGCT TCGAAGAATGAACAGCGGCCCATCGCCAGTGGTACCGTTTCTTATAGTAGGAGTTCTTGGAATGGTCATTCTTGGTCCTACACTAATGGCAATTGTGGAT ACGGTGCTTTATCTGATTCAACCCAGCGAACCAGAAGCTACCCTGGAAGTACATGGCAGAACAACAGGTCTGTGTACGCTCTGATAGTGAAGGAAATGGT TTGGGGGCACTGA
AA sequence Show only first row Show all	>Lus10001338 pacid=23146553 polypeptide=Lus10001338 locus=Lus10001338.g ID=Lus10001338.BGIv1.0 annot-version=v1.0 MNAKRKASPTAIPLPPNGAATAEGDHDHAAVSDGLEPATYATETAAIRDGNQVSQRKCEDVRNDGDGLDEVDDDVDANEEEDQEEEEADAAAEDERPKLD EGFFEIESIRRKRVRKGQLQYLIKWRGWPETANTWEPLENLQSCSDVIDAFEESLLSGKSSWKRKRKWGVSNSYNKKKQPHTSSWNKVTGDDDRRSLPST SLNTSSLASLPAYTKEEDNNEYDPKLRELRGSRPSDNADADKVAVQSDAKSPAVEYGLLKVDSVDTAQNNHQIGAKRRKSASVKRFRKDQASCEPRDISL PKFSLSSGTSAQLRTEAFSLTGCGSGYKAESPIIKILKPVSFSNSSSDNIQDVLVTFVALRSDGKEILVDNKFLKAHNPLLIVIPAATNIAAFTVNLATA SKNEQRPIASGTVSYSRSSWNGHSWSYTNGNCGYGALSDSTQRTRSYPGSTWQNNRSVYALIVKEMVWGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10001338 [exp]	0	1
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	2.2	0.8462
AT4G36980			unknown protein		Lus10019346 [exp]	2.8	0.8302
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10027025 [exp]	3.5	0.8183
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10005630 [exp]	6.8	0.7603
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	11.0	0.7697
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Lus10035957 [exp]	12.4	0.7941
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022358 [exp]	13.6	0.7836
AT3G12050			Aha1 domain-containing protein...		Lus10029141 [exp]	14.5	0.7645
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	17.2	0.8045
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	17.7	0.8031

Compare expression of checked genes

Lus10001338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.