Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17620 447 / 6e-159 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013643 [exp] 519 / 0 AT5G17620 558 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G072300 [exp] 469 / 1e-167 AT5G17620 582 / 0.0 unknown protein Potri.019G044100 [exp] 413 / 1e-144 AT5G17620 467 / 4e-166 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06694 [flax] [poplar] Plant_NMP1 Plant nuclear matrix protein 1 (NMP1)
Representative CDS sequence Show only first row Show all	>Lus10001340 pacid=23146566 polypeptide=Lus10001340 locus=Lus10001340.g ID=Lus10001340.BGIv1.0 annot-version=v1.0 ATGGAGGAGATTCAGAAGAAGCTATCAGTTTTGAGTTATCCGCGAGCCGATGTTCCTGCTCAGTCTCTCCTCTTCGCCGGCATGGAACGCTACGAGCTCC TCGAATGGCTCTTCTTCAAGTCTCTCTTTCTCTCTTTACTGTTACTTATATATGCTAATGCGCTTGGATCGAGCTTCAATTTGGTCTGGTCTCATCATTG TTGGGTGATAAATCTCCCTTCTCTCAACAAAATCCCCAAGGAGATGCCATGGATCGTGATGAAGAAACTTCTCGAATACAATGGACGAGGAAGCTACGAA GATCGAACTCAAATGCTTCGTTTAATAGTTGATCTTGTTGAGGCTAGCATTTATGCCGATAATCCAGAATGGAGCATTGATGAGCAGGTAGCAAAGGACA TACAACTAATAGATTCAATTGCGGAGAAGCAAGCTCTGATATTCTCAGAGGAGTGCAAGTTGTTTCCTGCAGATGTTCAGATTCAATCCATATATCCACT GCCTGATGTATCAGAGTTGGAGACCAAGCTTTCAGAGCAGTCAAAAATTCTCTTAAATCTTCAGCAGAAAGTTGATGATTTGGCATCAAAGCATGCTTAT AATCCAGGAGAGGAGTACGCAGAGGTGGAATCCCAACTTCGGCAACACTTGGAGTCCTTCTTAGAAACTGCAAGATCATTCAACATGATCTACACAAAGG AAATTCGCCCATGGACACATATGATGGAAGTACCACAGCTCCATGGATTTGGGCCTGCTGCTAATCGATTGTTGGAAGCATACAAGATGCTTCTAAAGTT TCTGGGGAACCTGAGGAACCTTAGAGATTCATATGCAGCTCTTGCGGTAGGGTCATCGGAAACAGTGAGTGGTGAACCGACATCAGTAACAAAGATCATA TCAGAGTGCGAGTCTGCATTGACCTTCTTGAATCACGATCTCTCCATACTTTCAGCTTCTATTGCCAGGGAGAAAGGTGTCAGTGCAAGTCCATGA
AA sequence Show only first row Show all	>Lus10001340 pacid=23146566 polypeptide=Lus10001340 locus=Lus10001340.g ID=Lus10001340.BGIv1.0 annot-version=v1.0 MEEIQKKLSVLSYPRADVPAQSLLFAGMERYELLEWLFFKSLFLSLLLLIYANALGSSFNLVWSHHCWVINLPSLNKIPKEMPWIVMKKLLEYNGRGSYE DRTQMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQSKILLNLQQKVDDLASKHAY NPGEEYAEVESQLRQHLESFLETARSFNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSYAALAVGSSETVSGEPTSVTKII SECESALTFLNHDLSILSASIAREKGVSASP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17620			unknown protein		Lus10001340 [exp]	0	1
AT5G17620			unknown protein		Lus10013643 [exp]	2.2	0.8593
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10028476 [exp]	2.4	0.8391
AT3G59490			unknown protein		Lus10013685 [exp]	3.3	0.8206
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	3.5	0.8193
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	4.5	0.8431
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	4.6	0.8551
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	6.0	0.8524
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10000565 [exp]	6.8	0.8022
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10030352 [exp]	6.9	0.8135
AT1G64355			unknown protein		Lus10023098 [exp]	7.2	0.8191

Compare expression of checked genes

Lus10001340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.