Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 205 / 3e-65 HXXXD-type acyl-transferase family protein (.1) AT3G03480 184 / 4e-57 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT3G48720 88 / 3e-21 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 88 / 5e-21 HXXXD-type acyl-transferase family protein (.1) AT5G41040 84 / 2e-19 HXXXD-type acyl-transferase family protein (.1.2) AT1G03390 80 / 5e-18 HXXXD-type acyl-transferase family protein (.1) AT2G19070 78 / 2e-17 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G27620 78 / 2e-17 HXXXD-type acyl-transferase family protein (.1) AT5G57840 77 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT5G48930 75 / 2e-16 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026872 [exp] 271 / 8e-93 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 236 / 1e-79 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10020331 [exp] 242 / 2e-79 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 229 / 2e-74 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 228 / 1e-73 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 227 / 2e-73 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 208 / 2e-66 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 151 / 9e-45 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 92 / 3e-22 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 233 / 7e-76 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 228 / 3e-74 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 228 / 7e-74 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 219 / 6e-71 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 206 / 1e-65 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 201 / 7e-64 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 188 / 1e-58 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G447766 [exp] 181 / 1e-58 AT5G17540 241 / 6e-78 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 185 / 2e-57 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.011G153500 [exp] 183 / 1e-56 AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10001341 pacid=23146560 polypeptide=Lus10001341 locus=Lus10001341.g ID=Lus10001341.BGIv1.0 annot-version=v1.0 ATGTTCAAGGTCCGAAGACAAGTGCCGGAGCTGGTCCGGCCGGCCAAACCGACTCCACACGAGCTGAAGCCACTCTCCGACATCGACGACCAGGAGGGAC TTCGATTCCACATCCCGGTGATTCAGTTCTACAACCACCGACCTTCCATGAGCGGCAAGGACCCGGCGGCGATTATCCGTACAGCACTGGCGGATACGCT CGTGCCTTACTATCCCTTTGCTGGGCGGATGAGAGAAGGCCCTAACCGTAAGCTCATGGTGGAGTGTACCGGCGAAGGTGTTCTGTTCATCGAGGCTGAT GCGGATGTACGGCTGGCGGATTTCGGTCACATGATTCACCCACCATTTCCATGCATTGAAGAGCTGCTGTACGATGTTCCTGGATCTAGCGCCATCCTCC ACGCCCCACTACTGCTCATTCAGGTACAAGCAATAATTGCTTCTGTTTAG
AA sequence Show only first row Show all	>Lus10001341 pacid=23146560 polypeptide=Lus10001341 locus=Lus10001341.g ID=Lus10001341.BGIv1.0 annot-version=v1.0 MFKVRRQVPELVRPAKPTPHELKPLSDIDDQEGLRFHIPVIQFYNHRPSMSGKDPAAIIRTALADTLVPYYPFAGRMREGPNRKLMVECTGEGVLFIEAD ADVRLADFGHMIHPPFPCIEELLYDVPGSSAILHAPLLLIQVQAIIASV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10001341 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10026872 [exp]	2.0	0.8820
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10006672 [exp]	8.7	0.8944
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	9.2	0.8876
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	12.5	0.8891
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10035822 [exp]	15.3	0.8618
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	18.3	0.8659
ATCG00670		PCLPP, ATCG0067...	CASEINOLYTIC PROTEASE P 1, pla...		Lus10006595 [exp]	20.8	0.8625
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	20.9	0.8756
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	21.7	0.8642
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	21.9	0.8529

Compare expression of checked genes

Lus10001341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.