Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12300 67 / 8e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G50570 62 / 3e-11 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G55530 61 / 1e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036036 [exp] 268 / 3e-89 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009692 [exp] 149 / 1e-43 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009693 [exp] 93 / 1e-24 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 62 / 2e-11 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10003765 [exp] 61 / 1e-10 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10032578 [exp] 57 / 2e-09 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070400 [exp] 127 / 3e-34 AT5G12300 283 / 2e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G275800 [exp] 107 / 3e-27 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G088400 [exp] 67 / 5e-13 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 63 / 2e-11 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001346 pacid=23162232 polypeptide=Lus10001346 locus=Lus10001346.g ID=Lus10001346.BGIv1.0 annot-version=v1.0 ATGGTTTCCGAGTATTTCGATCAGAAACTCGGATCCTTCCTCCATTTAGGAAATCTTCCACCTCTCCCCGCCGATTACGGAGGTGGTTCGGTTTCTCCCG GCGGAAGCTTCAGGACATCATCCGGGTTCATTAGGTCCTCCACTACTACAAGCTTCACTGACGAGAAGAAGAGCTGGCGATCGTCACCCTCCGCCGCCTC CCTGAATGTCTCTGTCTCCGGCGAAGGAAATCAGAGCTCGTCGTCTTGCTCTGGCGCGTGTCCGGACACTCCGACGTCGAGGAAAGGGAGCTTAATCAGA GACGACAAGGATGGGAGAAAAGAAGAGGGAAACGGTAAGTACGGCGAAATCATAGCGGCGACTACTCTGCCGCCGGTGATTCCGAAGATGAATTCGGAGG CGGAGGAATCGGCTATGCAGCAGCAGATAGTGGATATGTACATGAGGAGTATGCAGCAGTTTACTGAGTCGCTTGCTAAAATGAAGCTTCCGATGGATTT GCACAAACCCGGAGGAGGAGGAGGAGATTTGATTCATGGGAATAGTGGTAATGATCATAAGCAGGAGGATGAAATTGATGGGCACCAACAACAGCAGCAG AAGAAGATGAAGAAAAAGGATGGATCAAGGGTGTTTTTTATGGGAGCTGAGCCTTCACCATTCATAACTGTATATTAA
AA sequence Show only first row Show all	>Lus10001346 pacid=23162232 polypeptide=Lus10001346 locus=Lus10001346.g ID=Lus10001346.BGIv1.0 annot-version=v1.0 MVSEYFDQKLGSFLHLGNLPPLPADYGGGSVSPGGSFRTSSGFIRSSTTTSFTDEKKSWRSSPSAASLNVSVSGEGNQSSSSCSGACPDTPTSRKGSLIR DDKDGRKEEGNGKYGEIIAATTLPPVIPKMNSEAEESAMQQQIVDMYMRSMQQFTESLAKMKLPMDLHKPGGGGGDLIHGNSGNDHKQEDEIDGHQQQQQ KKMKKKDGSRVFFMGAEPSPFITVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	0	1
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10007293 [exp]	1.4	0.9065
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	1.7	0.8924
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	2.4	0.8993
AT3G18420			Protein prenylyltransferase su...		Lus10035087 [exp]	2.6	0.8863
AT2G01520		ZCE1, MLP328	\(Zusammen-CA\)-enhanced 1, ML...		Lus10028887 [exp]	2.8	0.8892
AT3G57540			Remorin family protein (.1)		Lus10026302 [exp]	4.9	0.8872
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	7.7	0.8265
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	9.7	0.8291
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	10.0	0.8884
AT2G43990			unknown protein		Lus10008165 [exp]	10.4	0.8447

Compare expression of checked genes

Lus10001346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.