Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75390 143 / 5e-44 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT4G34590 134 / 2e-40 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT2G18160 120 / 5e-35 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G62420 95 / 3e-25 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT5G15830 71 / 1e-15 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G13600 70 / 3e-15 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT3G30530 67 / 2e-14 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT2G04038 67 / 3e-14 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT5G38800 62 / 2e-12 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT4G37730 62 / 6e-12 bZIP ATBZIP7 basic leucine-zipper 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024279 [exp] 267 / 5e-93 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 129 / 4e-38 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 128 / 6e-38 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 127 / 2e-37 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10010005 [exp] 100 / 3e-27 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10025024 [exp] 99 / 7e-27 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10037750 [exp] 70 / 1e-15 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10011557 [exp] 68 / 5e-15 AT3G49760 87 / 9e-23 basic leucine-zipper 5 (.1) Lus10011722 [exp] 68 / 2e-14 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231300 [exp] 184 / 2e-60 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.002G031900 [exp] 172 / 9e-56 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 163 / 4e-52 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.004G158200 [exp] 160 / 9e-51 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.007G019900 [exp] 135 / 8e-41 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2) Potri.005G119300 [exp] 130 / 6e-39 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.002G196200 [exp] 102 / 3e-28 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.014G120800 [exp] 100 / 3e-27 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.007G006900 [exp] 77 / 9e-18 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 72 / 6e-16 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10001347 pacid=23162235 polypeptide=Lus10001347 locus=Lus10001347.g ID=Lus10001347.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCCAGTGGGAACTCGTCCTCCCCAGGCGGATCTTCCTCCGTGCTCCTGAACTCCGGCTCCGACGAGGACCTTCAGCAACTGGTGATGGAAG AGAGGAAGCGTAAGAGAATGCAATCGAACCGAGAGTCGGCGAGGCGGTCGAGGATGAGGAAGCAGAAGCATATGGACGATCTGATGGTTCAGGTGAGCCA GCTCAGGAAAGACAACAGCCAGATCCTCACTGCCATCAACGTTACCACACAGCACTTTTTGAACGTCGAGGCCGACAACTCAGTCCTCCGAGCTCAGATC GTCGAGCTCGCCCACCGCCTCGATTCGCTCACTGCAATCCTCGATTTCATCGGAAACGGATCCTGCAGCTGGGAAACGGATCAGGTGGTGGTGGTGGATT GTATCCAGCCGGCTGAGAGCTTTCTCAACAACCCTTTGAATTCGATTTACCTTAACCAGCCCATCATGGCCTCGCCCAATTTGTTTCAGTACTGA
AA sequence Show only first row Show all	>Lus10001347 pacid=23162235 polypeptide=Lus10001347 locus=Lus10001347.g ID=Lus10001347.BGIv1.0 annot-version=v1.0 MASSSGNSSSPGGSSSVLLNSGSDEDLQQLVMEERKRKRMQSNRESARRSRMRKQKHMDDLMVQVSQLRKDNSQILTAINVTTQHFLNVEADNSVLRAQI VELAHRLDSLTAILDFIGNGSCSWETDQVVVVDCIQPAESFLNNPLNSIYLNQPIMASPNLFQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	0	1
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	3.5	0.8443
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	4.4	0.8615
AT2G39210			Major facilitator superfamily ...		Lus10014640 [exp]	4.5	0.8155
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	6.3	0.8354
AT5G08350			GRAM domain-containing protein...		Lus10010166 [exp]	9.2	0.8222
					Lus10028522 [exp]	9.7	0.8537
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	9.9	0.8327
AT1G26920			unknown protein		Lus10012840 [exp]	11.6	0.7837
AT1G07850			Protein of unknown function (D...		Lus10036142 [exp]	11.7	0.7818
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	13.2	0.8502

Compare expression of checked genes

Lus10001347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.