Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71170 320 / 1e-109 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 319 / 6e-109 6-phosphogluconate dehydrogenase family protein (.1) AT4G29120 299 / 9e-101 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 126 / 2e-34 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 127 / 5e-34 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G20930 101 / 1e-24 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 92 / 2e-20 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT5G41670 51 / 4e-07 6-phosphogluconate dehydrogenase family protein (.1.2) AT3G02360 50 / 1e-06 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 50 / 1e-06 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015455 [exp] 350 / 3e-120 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 255 / 4e-84 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 145 / 4e-43 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 139 / 8e-39 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 139 / 8e-37 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 108 / 8e-28 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10023258 [exp] 101 / 2e-24 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10034977 [exp] 96 / 5e-24 AT4G29120 232 / 2e-77 6-phosphogluconate dehydrogenase family protein (.1) Lus10016077 [exp] 91 / 4e-20 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211500 [exp] 455 / 8e-163 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.018G088000 [exp] 292 / 6e-98 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 140 / 9e-39 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.014G197900 [exp] 132 / 1e-36 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.001G465600 [exp] 104 / 2e-25 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 98 / 2e-22 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G135600 [exp] 51 / 4e-07 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G038450 [exp] 48 / 1e-06 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.017G106900 [exp] 49 / 2e-06 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108880 [exp] 49 / 3e-06 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10001349 pacid=23162022 polypeptide=Lus10001349 locus=Lus10001349.g ID=Lus10001349.BGIv1.0 annot-version=v1.0 ATGGACACTCCTTACCCAAGTCCCATCTCCCCCTCCCAAACTCGCATAGGTTGGATTGGGATAGGCGTAATGGGCGCCGCCATGGCTTCTCGCCTCCTCT CTGTCGGCTACTCCGTCACTGTCTACGCCCGAACTCCATCAAAGGCCGAACATCTACTTTCCCTCGGAGCCCACCTCGCCGATTCTCCGATCGCCGTTGC TCAGTCCAGCGATGTAGTGTTTACCATGTTGGGACACCCATCAGATGTTCGATCAATTGTCTTAGAGAGCCACGGCGTCCTCGCCGGCCTAAATCCCGGC GGGGTAGTAGTCGACACCACGAGTAGCCATCCGGCGCTAGCACGGGAGATTTTTTATGCTGCTCGGCGAAAAGGCTGCTGGTCTGTTGATTCTCCGGTTT CAGGTGGGGACATCGGCGCAAGAGATGGGAAGTTGGCTGTATTCGCCGGAGGGGATGAAGGAGTTGTCAAGTGGCTAGCGCCTCTGTTTGATGTGTTGGG AAAAGTTACTTATATGGGCGGAGCAGGGTGCGGGCAAAGTTGCAAGATTGCGAACCAGATTGTGGTGGGGGCTAATTTGCTGGGGTTGAGTGAAGGGCTG TTTTTTGCTGAAAAATCTGGACTGGATGCGAACGAGTTTGTGGATGCAGTGAAGGGAGGAGCCGCTGGGTCAATGGTGATGGAGTTGTTTGGGAAGAGAA TGATTGATAGGGACTTTAGGCCAGGTGGGTTTGCGGAGTATATGGTTAAGGACATGGGAATGGGTGTGGATGTTGTGGAAGAGAGTGAGGATGATAAAGT TCCAATCTTGCCCGGTGCTGCTCTGTGCAAGCAGCTCTTTAGTGGAATGGTTGCCAATGGAAACGGGAAGCTTGGAACTCAAGGTCTTATCACTGTGATT GAGAAGCTCAATGGCAAGTAA
AA sequence Show only first row Show all	>Lus10001349 pacid=23162022 polypeptide=Lus10001349 locus=Lus10001349.g ID=Lus10001349.BGIv1.0 annot-version=v1.0 MDTPYPSPISPSQTRIGWIGIGVMGAAMASRLLSVGYSVTVYARTPSKAEHLLSLGAHLADSPIAVAQSSDVVFTMLGHPSDVRSIVLESHGVLAGLNPG GVVVDTTSSHPALAREIFYAARRKGCWSVDSPVSGGDIGARDGKLAVFAGGDEGVVKWLAPLFDVLGKVTYMGGAGCGQSCKIANQIVVGANLLGLSEGL FFAEKSGLDANEFVDAVKGGAAGSMVMELFGKRMIDRDFRPGGFAEYMVKDMGMGVDVVEESEDDKVPILPGAALCKQLFSGMVANGNGKLGTQGLITVI EKLNGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	0	1
					Lus10014600 [exp]	1.4	0.8682
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	1.7	0.8728
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	2.8	0.8495
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Lus10010486 [exp]	2.8	0.8625
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	3.7	0.8556
AT1G17100			SOUL heme-binding family prote...		Lus10042093 [exp]	4.2	0.8672
AT1G67350			unknown protein		Lus10015785 [exp]	4.5	0.8458
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	4.9	0.8569
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	5.9	0.8601
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	7.1	0.8400

Compare expression of checked genes

Lus10001349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.