Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22480 721 / 0 ZPR1 zinc-finger domain protein (.1) AT5G37340 714 / 0 ZPR1 zinc-finger domain protein (.1.2.3) AT1G55200 104 / 7e-23 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 104 / 9e-23 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G02630 97 / 1e-20 Protein kinase superfamily protein (.1) AT5G56790 97 / 2e-20 Protein kinase superfamily protein (.1) AT3G05140 94 / 9e-20 RBK2 ROP binding protein kinases 2 (.1) AT4G35030 91 / 8e-19 Protein kinase superfamily protein (.1.2.3) AT3G26940 91 / 8e-19 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT5G63940 91 / 2e-18 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015454 [exp] 1848 / 0 AT5G22480 719 / 0.0 ZPR1 zinc-finger domain protein (.1) Lus10017273 [exp] 109 / 2e-24 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10013566 [exp] 105 / 2e-23 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10001996 [exp] 104 / 2e-22 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 103 / 2e-22 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006148 [exp] 103 / 3e-22 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040097 [exp] 95 / 1e-19 AT1G55200 444 / 5e-145 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018722 [exp] 93 / 3e-19 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10006957 [exp] 91 / 4e-19 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G075600 [exp] 746 / 0 AT5G22480 758 / 0.0 ZPR1 zinc-finger domain protein (.1) Potri.005G185500 [exp] 102 / 3e-22 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.001G200000 [exp] 101 / 9e-22 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.003G034900 [exp] 100 / 2e-21 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 100 / 2e-21 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.004G154000 [exp] 97 / 1e-20 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.006G150100 [exp] 95 / 8e-20 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G242800 [exp] 95 / 1e-19 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G102400 [exp] 93 / 4e-19 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G219300 [exp] 92 / 4e-19 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF03367 [flax] [poplar] zf-ZPR1 ZPR1 zinc-finger domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10001350 pacid=23162024 polypeptide=Lus10001350 locus=Lus10001350.g ID=Lus10001350.BGIv1.0 annot-version=v1.0 ATGGGTGCTCCTAAGATATCTGCACCTCCAAGGGAGGCGGAGAGTGTGATTGTTGTGATAGATGGTAATCGAAATAAGCAAAATGTTGACGCCATGGATT GGGCTCTCAAGCACGTGGTTCGACGGGGAGATAGTGTTATTGCTCTTGGAGTAATAGGTGGGTTTGGGATGAAGAATACTTGCTTCCCGTTCTACATGGG CGTTGGCTTCTCTGGAATCCGGGAAAGATTAGAGTTTTCAACTTTAAGACAAGAGATGAGACCCAAGGTACTTGGAGAAGAAATTGAGAGAAAGAAACAA CAGTATCAGAATAACCTACACCCGTTCTATCGAAAATGTAAAAAGAATGAGGTGAACTTAGAAATCAAGCTGACATTCGGTTGCTGCCCTGTAAAGATTA CGGTAGAACAAGCTTGGAGCTCAAATCCGCGGTGGATTGTTTTAGACAGCAATTGGAAGAAGTACAAATCGATCATATACAGCAAAGTTGGATGCAGCAT TGCGGTGATGAAGGGAAATGATCTAGCAACCTTGATTCCATCAAGGAACAGCCAAGCTGGAACATCTAGTATTGTCTCTTGCAGCAACCAAGGTGAGCCT AATGTTACTGATGATGGTGAGGCATCGGCATCGGCATCAGCATCAGCATCCATGCAATCATCAGAATCAGCAGGTGAAAGCTCTGGATGGTACCCATTAT CCTGGAGAATTGGATTTCCTCGAGCATTTTCACAAACAGATTTGGAGGTTATGACAAATGGCTTCTCCAAAGACAATATCGTTCCCCATGGACCAGACGA CATTAGAATCTACGAAGGAATATTCCAGCAAACTCCCGTTCTCATAAGATCTTTCGTTGAAGATGATGAACGCTTTTGGACAGCCCTCACAATCCTATCC AGGATCCGCCACAAGAACATAATGAACCTTGTAGGCTACTGCTGCTATGACAACTCCACCTTCTTGATTTTCGACAACCCTTGCATGGGTTCTTTGGAAA TCAACCTTCAAGTTGATGATTTGGCCAGCAAGTTATCCTGGAAAGCAAGGTGGAACATTGCCCTGGAAATAGGTGGGAGCCTGCAGTATCTTCACAAAGA ATGCGCTACTGATGGAGCCATTGTTCACCTCTCTGTTTGTTCTTCTCATGTCAGCTTATGTTATGGATCCATCACTATGCTTGCCTACTTTGCAACCGCT AGATTCCTTAAAGATGAAGGGGCAAATAACGATGACTGTAAAACTCGAATGGGGAGAAACGAGGAAAATGATGAACTGATAGCTGTGGATATACATGACT ATGGAGTGCTCCTGATCGAGCTCATCAGCGGAATGAGTGCCCGGTTGTTCCAGAGACAAGGCGTGGGTCAAAGCCTGGTTGTCTGGGCAGTGCCGCTTCT GGAAAATGGATGTATAGATGCAGTGTTGGACCCCAGGGTGGATGAAGAGACAAATGATAGGAGTATGATTCAGAAGCTAGTCAATGCAGCTTTGGTTTGC CTGAATATTAACGATGAATCTGCAGGGCATCTGCTTTCCATGAGCCAGGGGATAACAAGGTTGTTGTTGACTTCGATTCCTCACTTCAGAAAGATCCTGT TATCCGCATTCGAATGCCCGCATTGTAATGAGAGGAATAATGAAGTGCAGTTTGCTGGTGAAATCCAGCCACGGGGTTGTTGTTACTCCTTGAATGTCCA ACTAGGCAACCAGAAGGCACTAGATCGACAAGTTGTAAAATCTGAGTCTGCAACCATAAAGATTCCTGAATTGGACTTCGAGATTCCTCCTGAGGCACAA CGTGGTAGCCTATCAACAGTAGAAGGAATTTTGGTACGTGCAGCTGATGACTTGGAAGCTCTTCAAGAAGAACGCAGGAAAGTGAATCCTGAAACAGCTG AAGCACTGGATCAGTTCTTGATTAAGTTGAGGGCCTGTGCGACCGGTGATTCATCATTTACTTTCATCTTGGACGATCCCACTGGAAACAGCTTTATTGA GAACCCGTTTGCTCCATCACCAGATCCAGCGTTGAATATCAAGTTCTATGATCGAACTCCAGAGCTGCAAGCATCTTTGGGATATCTTGCTAATCCAACT CAGCCGGTAACGGAGTCAAGATCTGTAGAGGCAGCAGAGACTGATGTCAATTCACAAACAGTAGAACCTCATGGATCAGTTGGAGCAGTAGCTGGTCATC GAGCCATTGCGCAGAGTAGTAGTGTGGATATTGCTGAGGCTATGTTTCGATACACTTCACCGGAGGAGGTGATGACCTTCCCGTCAACTTGTGGGGCTTG TAATGTCAGCTGTGTAACTCGGATGTTCGTCACTAACATCCCATACTTCCAAGAAGTAATTGTGATGGCATCCACCTGTGATTCTTGTGGTTACCGCAAC TCTGAGTTGAAGCCAGGCGGGGCAATTCCCGAGAAGGGAAAGAAAATAACACTCTGTGTGAAGAATGTTAAAGACCTCAGCCGTGATGTTATCAAGTCGG ATACAGCAGGTGTGATAATTCCCGAGGTTGATTTGGAATTGGGCAGTGGCACTCTGGGAGGAATGGTGACAACAGTGGAGGGATTGATTACAAAGATCAG TGAAAGCCTTGAGAGAGTGCACGGATTTACATTTGGTGATAGCGTTGACGAGAATAGGAAAACAAAATGGCAAGACTTCAGATCAAGACTGATCAAGCTT TTGAAGCTTGAAGAGCCCTGGACATTGATTCTAGATGATGCTTTGGCAAATTCTTTCATTGCTCCAGCAACAGATGAATTGAAGGACGACCACCAGCTAA CCTATGAGGACTACGAGAGGAGCTTCGAGCAAAACGAAGAGTTGGGACTAAACGATCTGGACACTTCATCAGCCGATGCTGCATACAGCGGCAGCACAGG TGTTGTGGACGTTAAGGATGATGCTGGGAGACTGAGAATTAGAAAGTAA
AA sequence Show only first row Show all	>Lus10001350 pacid=23162024 polypeptide=Lus10001350 locus=Lus10001350.g ID=Lus10001350.BGIv1.0 annot-version=v1.0 MGAPKISAPPREAESVIVVIDGNRNKQNVDAMDWALKHVVRRGDSVIALGVIGGFGMKNTCFPFYMGVGFSGIRERLEFSTLRQEMRPKVLGEEIERKKQ QYQNNLHPFYRKCKKNEVNLEIKLTFGCCPVKITVEQAWSSNPRWIVLDSNWKKYKSIIYSKVGCSIAVMKGNDLATLIPSRNSQAGTSSIVSCSNQGEP NVTDDGEASASASASASMQSSESAGESSGWYPLSWRIGFPRAFSQTDLEVMTNGFSKDNIVPHGPDDIRIYEGIFQQTPVLIRSFVEDDERFWTALTILS RIRHKNIMNLVGYCCYDNSTFLIFDNPCMGSLEINLQVDDLASKLSWKARWNIALEIGGSLQYLHKECATDGAIVHLSVCSSHVSLCYGSITMLAYFATA RFLKDEGANNDDCKTRMGRNEENDELIAVDIHDYGVLLIELISGMSARLFQRQGVGQSLVVWAVPLLENGCIDAVLDPRVDEETNDRSMIQKLVNAALVC LNINDESAGHLLSMSQGITRLLLTSIPHFRKILLSAFECPHCNERNNEVQFAGEIQPRGCCYSLNVQLGNQKALDRQVVKSESATIKIPELDFEIPPEAQ RGSLSTVEGILVRAADDLEALQEERRKVNPETAEALDQFLIKLRACATGDSSFTFILDDPTGNSFIENPFAPSPDPALNIKFYDRTPELQASLGYLANPT QPVTESRSVEAAETDVNSQTVEPHGSVGAVAGHRAIAQSSSVDIAEAMFRYTSPEEVMTFPSTCGACNVSCVTRMFVTNIPYFQEVIVMASTCDSCGYRN SELKPGGAIPEKGKKITLCVKNVKDLSRDVIKSDTAGVIIPEVDLELGSGTLGGMVTTVEGLITKISESLERVHGFTFGDSVDENRKTKWQDFRSRLIKL LKLEEPWTLILDDALANSFIAPATDELKDDHQLTYEDYERSFEQNEELGLNDLDTSSADAAYSGSTGVVDVKDDAGRLRIRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22480			ZPR1 zinc-finger domain protei...		Lus10001350 [exp]	0	1
AT4G32605			Mitochondrial glycoprotein fam...		Lus10043448 [exp]	19.5	0.7953
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	25.1	0.7352
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	27.0	0.7919
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10034167 [exp]	33.5	0.7767
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Lus10033342 [exp]	39.9	0.7746
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	55.1	0.7605
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	61.8	0.7659
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	81.9	0.7235
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10008505 [exp]	86.2	0.7537
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	109.2	0.7093

Compare expression of checked genes

Lus10001350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.