Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44730 268 / 4e-90 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015451 [exp] 300 / 8e-103 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G154500 [exp] 275 / 4e-93 AT5G44730 422 / 3e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10001353 pacid=23162020 polypeptide=Lus10001353 locus=Lus10001353.g ID=Lus10001353.BGIv1.0 annot-version=v1.0 ATGGCTGCATTGTTGTCTAAGTTGCGATGTATCACTGTGGATGTGACGGGCACACTAATTGCTTACAAAGGGGACCTTGGTGACTACTATTGCATGGCTG CAAAATCTGTTGGATTACCATGTCCTGACTACAAACGTGTCCACGAGGGTTTCAAAATTGCTTATACAGACATGGCCAAGAAGTATCCCTGTTTTGGTCA TGCTGCTAAAGTACCCAACATTGTTTGGTGGAAGACCTGCGTCCGAGACTCATTTGCCAAGGCTGGATATGATTATGATGAAGAGACATTTGAGAAGATC TTCAGACGCATATATGCTTCCTTTGGTTCCTCGGCACCTTATAAGATCTTCCCAGACTCCCAGCCATTCCTCAGATGGGCACGTGAGAATGGTCTCATTG TCGGCATCGTTAGCAATGCTGAATACCGTTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNGAAGTATGTTGGTGGTAG
AA sequence Show only first row Show all	>Lus10001353 pacid=23162020 polypeptide=Lus10001353 locus=Lus10001353.g ID=Lus10001353.BGIv1.0 annot-version=v1.0 MAALLSKLRCITVDVTGTLIAYKGDLGDYYCMAAKSVGLPCPDYKRVHEGFKIAYTDMAKKYPCFGHAAKVPNIVWWKTCVRDSFAKAGYDYDEETFEKI FRRIYASFGSSAPYKIFPDSQPFLRWARENGLIVGIVSNAEYRYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVCWW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10001353 [exp]	0	1
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	1.0	0.9332
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	3.0	0.8635
AT3G27220			Galactose oxidase/kelch repeat...		Lus10032070 [exp]	3.7	0.9080
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	4.2	0.9038
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029580 [exp]	5.7	0.8018
AT3G50150			Plant protein of unknown funct...		Lus10039777 [exp]	10.7	0.8227
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10006989 [exp]	11.0	0.7690
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	11.8	0.8663
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	13.1	0.8288
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	13.2	0.8777

Compare expression of checked genes

Lus10001353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.