Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71190 385 / 1e-135 TTN4, SAG18 senescence associated gene 18 (.1.2) AT5G11870 266 / 4e-89 Alkaline phytoceramidase (aPHC) (.1), Alkaline phytoceramidase (aPHC) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211600 [exp] 439 / 5e-157 AT1G71190 420 / 1e-149 senescence associated gene 18 (.1.2) Potri.006G228700 [exp] 258 / 5e-86 AT5G11870 343 / 1e-119 Alkaline phytoceramidase (aPHC) (.1), Alkaline phytoceramidase (aPHC) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF05875 [flax] [poplar] Ceramidase Ceramidase
Representative CDS sequence Show only first row Show all	>Lus10001354 pacid=23162026 polypeptide=Lus10001354 locus=Lus10001354.g ID=Lus10001354.BGIv1.0 annot-version=v1.0 ATGCATAAACGCACCATTTACGCTTGGGCAGTTGCCATTATATGTTTCTTGGTGCTCATGTTCGTTACTCCTACCATCCCTCAATCTCAAGAGTACCACG ATTTCGCTGACCACCGCCATTTCCTTGGAATTCCCAATATGCTCAATGTGGTTTCCAATTTCCCCTTCCTTGTCATTGGGCTAATTGGACTTGTTCTTTG CTATCATGGCAATTACTTCAAGCTCAGTTTGCAAGGTGAGCTTTGGGGGTGGACATGTTTTTTCGTTGGTGTTGGGGCTGTAGCTTTTGGATCTGCATAC TATCATCTCGAGCCAAATGATGCTCGTCTTGTGTGGGATCGCTTACCAATGACCATTGCGTTTACTTCTATCATTGCAATTTTTATCATCGAAAGGATTG ATGAGCACAAGGGAATGATCTCTCTCATACCTTTAATTTTGGCCGGTATTATAAGCATTGCATACTGGAGGTATTTTGATGATCTCCGGCCATATGCTGT CATTCAATTTGTTCCTTGCATTGCAATTCCACTAATGGCGATTCTGTTACCTCCAATGTACACGCACTCTACGTACTGGTTATGGGCTGCAGCGTTTTAT CTTATTGCTAAAGTAGAAGAAGCTGCAGACGACCCAATATACGAATTGACTCAACACATTGTCAGTGGCCACACCCTTAAGCACCTTTGTGCTGCCATGG TTCCTGTCTTCTTGACTCTCATGCTCGCCAAGAGAACTATTCAAACAGATAGAATAAGTCTATATAGCATGTGGAGAGTTTCTTGGACCAAATACAAGGA GAACGGCTCACAGGTGGAGAGTTACAGTTGTACTTACACTACGGTACCAACCGAGGTACCCGAGGAACGGACTTGA
AA sequence Show only first row Show all	>Lus10001354 pacid=23162026 polypeptide=Lus10001354 locus=Lus10001354.g ID=Lus10001354.BGIv1.0 annot-version=v1.0 MHKRTIYAWAVAIICFLVLMFVTPTIPQSQEYHDFADHRHFLGIPNMLNVVSNFPFLVIGLIGLVLCYHGNYFKLSLQGELWGWTCFFVGVGAVAFGSAY YHLEPNDARLVWDRLPMTIAFTSIIAIFIIERIDEHKGMISLIPLILAGIISIAYWRYFDDLRPYAVIQFVPCIAIPLMAILLPPMYTHSTYWLWAAAFY LIAKVEEAADDPIYELTQHIVSGHTLKHLCAAMVPVFLTLMLAKRTIQTDRISLYSMWRVSWTKYKENGSQVESYSCTYTTVPTEVPEERT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	0	1
AT2G41150			unknown protein		Lus10022403 [exp]	3.2	0.8505
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Lus10005794 [exp]	5.3	0.8498
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	6.3	0.8285
AT5G50460			secE/sec61-gamma protein trans...		Lus10012539 [exp]	7.4	0.7970
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	8.9	0.8065
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	9.7	0.8239
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	10.7	0.8389
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	12.7	0.8155
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	14.4	0.7955
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	16.6	0.7736

Compare expression of checked genes

Lus10001354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.